Publications 2015 and Earlier

  • Heaton RK, Franklin DR Jr, Deutsch R, Letendre S, Ellis RJ, Casaletto K, Marquine MJ, Woods SP, Vaida F, Atkinson JH, Marcotte TD, McCutchan JA, Collier AC, Marra CM, Clifford DB, Gelman BB, Sacktor N, Morgello S, Simpson DM, Abramson I, Gamst AC, Fennema-Notestine C, Smith DM, Grant I; CHARTER Group. Neurocognitive change in the era of HIV combination antiretroviral therapy: the longitudinal CHARTER study. Clin Infect Dis. 2015 Feb 1; 60(3):473-80. doi: 10.1093/cid/ciu862. PMID: 25362201; PMC4303775.
  • Smith MD, Wertheim JO, Weaver S, Murrell B, Scheffler K, Kosakovsky Pond SL. Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection. Mol Biol Evol. 2015 May; 32(5):1342-53. doi: 10.1093/molbev/msv022. PMID: 25697341; PMC4408413.
  • Smith DM. What Can We Learn From Measles? No New HIV Infections. Top Antivir Med. 2015 Aug-Sep;23(3):108-10. PMID: 26518393. (PMCID not applicable)
  • Massanella M, Gianella S, Schrier R, Dan JM, Pérez-Santiago J, Oliveira MF, Richman DD, Little SJ, Benson CA, Daar ES, Dube MP, Haubrich RH, Smith DM, Morris SR. Methamphetamine Use in HIV-infected Individuals Affects T-cell Function and Viral Outcome during Suppressive Antiretroviral Therapy. Sci Rep. 2015 Aug 24; 5:13179. doi: 10.1038/srep13179. PMID: 26299251; PMC4547398.
  • Rhee SY, Blanco JL, Jordan MR, Taylor J, Lemey P, Varghese V, Hamers RL, Bertagnolio S, Rinke de Wit TF, Aghokeng AF, Albert J, Avi R, Avila-Rios S, Bessong PO, Brooks JI, Boucher CA, Brumme ZL, Busch MP, Bussmann H, Chaix ML, Chin BS, D’Aquin TT, De Gascun CF, Derache A, Descamps D, Deshpande AK, Djoko CF, Eshleman SH, Fleury H, Frange P, Fujisaki S, Harrigan PR, Hattori J, Holguin A, Hunt GM, Ichimura H, Kaleebu P, Katzenstein D, Kiertiburanakul S, Kim JH, Kim SS, Li Y, Lutsar I, Morris L, Ndembi N, Ng KP, Paranjape RS, Peeters M, Poljak M, Price MA, Ragonnet-Cronin ML, Reyes-Terán G, Rolland M, Sirivichayakul S, Smith DM, Soares MA, Soriano VV, Ssemwanga D, Stanojevic M, Stefani MA, Sugiura W, Sungkanuparph S, Tanuri A, Tee KK, Truong HM, van de Vijver DA, Vidal N, Yang C, Yang R, Yebra G, Ioannidis JP, Vandamme AM, Shafer RW. Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis. PLoS Med. 2015 Apr 7;12(4):e1001810. doi: 10.1371/journal.pmed.1001810. eCollection 2015 Apr. Erratum in: PLoS Med. 2015 Jun; 12(6):e1001845. PMID: 25849352; PMC4388826.
  • Wang X, Wu Y, Mao L, Xia W, Zhang W, Dai L, Mehta SR, Wertheim JO, Dong X, Zhang T, Wu H, Smith DM. Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men. Clin Infect Dis. 2015 Nov 1; 61(9):1462- 8. doi: 10.1093/cid/civ526. PMID: 26129754; PMC4599390.
  • Saravanan S, Gomathi S, Kausalya B, Boobalan J, Murugavel KG, Balakrishnan P, Mothi SN, Solomon SS, Kumarasamy N, Selvamuthu P, Solomon S, Smith DM. Differences in Evolution of HIV-1 Subtype C Reverse Transcriptase Between Children and Adults Likely Explained by Maturity of Cytotoxic T-Lymphocyte Responses. AIDS Res Hum Retroviruses. 2015 Jun; 31(6):655-7. doi: 10.1089/AID.2015.0023. PMID: 25839730; PMC4458742.
  • Mehta SR, Wertheim JO, Brouwer KC, Wagner KD, Chaillon A, Strathdee S, Patterson TL, Rangel MG, Vargas M, Murrell B, Garfein R, Little SJ, Smith DM. HIV Transmission Networks in the San Diego-Tijuana Border Region. EBioMedicine. 2015 Jul 18; 2(10):1456-63. doi: 10.1016/j.ebiom.2015.07.024. PMID: 26629540; PMC4634195.
  • de Oliveira MF, Murrell B, Pérez-Santiago J, Vargas M, Ellis RJ, Letendre S, Grant I, Smith DM, Woods SP, Gianella S. Circulating HIV DNA Correlates With Neurocognitive Impairment in Older HIV-infected Adults on Suppressive ART. Sci Rep. 2015 Nov 25; 5:17094. doi: 10.1038/srep17094. Erratum in: Sci Rep. 2016;6:19387. Murrel, Ben [corrected to Murrell, Ben]. PMID: 26603568; PMC4658529.
  • Tilghman M, Tsai D, Buene TP, Tomas M, Amade S, Gehlbach D, Chang S, Ignacio C, Caballero G, Espitia S, May S, Noormahomed EV, Smith DM. Pooled Nucleic Acid Testing to Detect Antiretroviral Treatment Failure in HIV-Infected Patients in Mozambique. J Acquir Immune Defic Syndr. 2015 Nov 1; 70(3):256-61. doi: 10.1097/QAI.0000000000000724. PMID: 26135327; PMC4607635.
  • Hoenigl M, Anderson CM, Green N, Mehta SR, Smith DM, Little SJ. Repeat HIV-testing is associated with an increase in behavioral risk among men who have sex with men: a cohort study. BMC Med. 2015 Sep 11; 13:218. doi: 10.1186/s12916-015-0458-5. PMID: 26444673; PMC4596465.
  • de Oliveira MF, Gianella S, Letendre S, Scheffler K, Kosakovsky Pond SL, Smith DM, Strain M, Ellis RJ. Comparative Analysis of Cell-Associated HIV DNA Levels in Cerebrospinal Fluid and Peripheral Blood by Droplet Digital PCR. PLoS One. 2015 Oct 2; 10(10):e0139510. doi: 10.1371/journal.pone.0139510. PMID: 26431315; PMC4592012.
  • Gianella S, Anderson CM, Richman DD, Smith DM, Little SJ. No evidence of posttreatment control after early initiation of antiretroviral therapy. AIDS. 2015 Oct 23; 29(16):2093-7. doi: 10.1097/QAD.0000000000000816. PMID: 26544575; PMC4638137.
  • Gianella S, Scheffler K, Mehta SR, Little SJ, Freitas L, Morris SR, Smith DM. Seminal shedding of CMV and HIV transmission among men who have sex with men. International journal of environmental research and public health. 2015; 12(7):7585-92. doi: 10.3390/ijerph120707585. PMID: 26198239; PMC4515676.
  • Gianella S, Smith DM, Daar ES, Dube MP, Lisco A, Vanpouille C, Margolis L, Haubrich RH, Morris SR. Genital Cytomegalovirus Replication Predicts Syphilis Acquisition among HIV-1 Infected Men Who Have Sex with Men. PLoS One. 2015 Jun 10; 10(6):e0130410. doi: 10.1371/journal.pone.0130410. PMID: 26061824; PMC4465639.
  • Chin BS, Shin HS, Kim G, Wagner GA, Gianella S, Smith DM. Short Communication: Increase of HIV-1 K103N Transmitted Drug Resistance and Its Association with Efavirenz Use in South Korea. AIDS Res Hum Retroviruses. 2015 Jun; 31(6):603-7. doi: 10.1089/AID.2014.0368. PMID: 25826122; PMC4516954.
  • Hoenigl M, Weibel N, Mehta SR, Anderson CM, Jenks J, Green N, Gianella S, Smith DM, Little SJ. Development and validation of the San Diego Early Test Score to predict acute and early HIV infection risk in men who have sex with men. Clin Infect Dis. 2015 Aug 1; 61(3):468-75. doi: 10.1093/cid/civ335. PMID: 25904374; PMC4542926.
  • Li JZ, Smith DM, Mellors JW. The need for treatment interruption studies and biomarker identification in the search for an HIV cure. AIDS. 2015 Jul 31; 29(12):1429-32. doi: 10.1097/QAD.0000000000000658. PMID: 25870989; PMC4529360.
  • Gianella S, Massanella M, Wertheim JO, Smith DM. The Sordid Affair Between Human Herpesvirus and HIV. J Infect Dis. 2015 Sep 15; 212(6):845-52. doi: 10.1093/infdis/jiv148. PMID: 25748324; PMC4548466.
  • Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Gene-wide identification of episodic selection. Mol Biol Evol. 2015 May; 32(5):1365-71. doi: 10.1093/molbev/msv035. PMID: 25701167; PMC4408417.
  • Ene L, Duiculescu D, Tardei G, Ruta S, Smith DM, Mehta S, Letendre S, Achim CL. Hepatitis B virus compartmentalization in the cerebrospinal fluid of HIV-infected patients. Clin Microbiol Infect. 2015 Apr; 21(4):387.e5-8. doi: 10.1016/j.cmi.2014.11.012. PMID: 25658525; PMC4424164.
  • Heaton RK, Franklin DR, Jr., Deutsch R, Letendre SL, Ellis RJ, Casaletto K, Marquine MJ, Woods SP, Vaida F, Atkinson JH, Marcotte TD, McCutchan JA, Collier AC, Marra CM, Clifford DB, Gelman BB, Sacktor N, Morgello S, Simpson DM, Abramson I, Gamst A, Fennema-Notestine C, Smith DM, Grant I. Reply to Haddow et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2015;60(9):1442-3. Epub 2015/02/04. doi: 10.1093/cid/civ045. PubMed PMID: 25645217; PubMed Central PMCID: PMC4415055.
  • Okulicz JF, Le TD, Agan BK, Camargo JF, Landrum ML, Wright E, Dolan MJ, Ganesan A, Ferguson TM, Smith DM, Richman DD, Little SJ, Clark RA, He W, Ahuja SK. Influence of the timing of antiretroviral therapy on the potential for normalization of immune status in human immunodeficiency virus 1-infected individuals. JAMA Intern Med. 2015 Jan; 175(1):88-99. doi: 10.1001/jamainternmed.2014.4010. PMID: 25419650; PMC4286496.
  • Fisher RG, Smith DM, Murrell B, Slabbert R, Kirby BM, Edson C, Cotton MF, Haubrich RH, Kosakovsky Pond SL, Van Zyl GU. Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure. J Clin Virol. 2015 Jan; 62:48-53. doi: 10.1016/j.jcv.2014.11.014. PMID: 25542470; PMC4279108.
  • Carter CC, Wagner GA, Hightower GK, Caballero G, Phung P, Richman DD, Pond SL, Smith DM. HIV-1 neutralizing antibody response and viral genetic diversity characterized with next generation sequencing. Virology. 2015 Jan 1; 474:34-40. doi: 10.1016/j.virol.2014.10.019. PMID: 25463602; PMC4259848.
  • de Oliveira MF, Murrell B, Pérez-Santiago J, Vargas M, Ellis RJ, Letendre S, Grant I, Smith DM, Woods SP, Gianella S. Circulating HIV DNA Correlates With Neurocognitive Impairment in Older HIV-infected Adults on Suppressive ART. Sci Rep. 2015 Nov 25; 5:17094. doi: 10.1038/srep17094. Erratum in: Sci Rep. 2016; 6:19387. Murrel, Ben [corrected to Murrell, Ben]. PMID: 26603568; PMC4658529.

2014

  • Gianella S, Massanella M, Richman DD, Little SJ, Spina CA, Vargas MV, Lada SM, Daar ES, Dube MP, Haubrich RH, Morris SR, Smith DM; California Collaborative Treatment Group 592 Team. Cytomegalovirus replication in semen is associated with higher levels of proviral HIV DNA and CD4+ T cell activation during antiretroviral treatment. J Virol. 2014 Jul; 88(14):7818-27. doi: 10.1128/JVI.00831-14. PMID: 24789781; PMC4097769.
  • Kim SB, Yoon M, Ku NS, Kim MH, Song JE, Ahn JY, Jeong SJ, Kim C, Kwon HD, Lee J, Smith DM, Choi JY. Mathematical modeling of HIV prevention measures including pre-exposure prophylaxis on HIV incidence in South Korea. PLoS One. 2014 Mar 24; 9(3):e90080. doi: 10.1371/journal.pone.0090080. PMID: 24662776; PMC3963840.
  • Ku NS, Lee Y, Ahn JY, Song JE, Kim MH, Kim SB, Jeong SJ, Hong KW, Kim E, Han SH, Song JY, Cheong HJ, Song YG, Kim WJ, Kim JM, Smith DM, Choi JY. HIV-associated neurocognitive disorder in HIV-infected Koreans: the Korean NeuroAIDS Project. HIV Med. 2014 Sep; 15(8):470- 7. doi: 10.1111/hiv.12137. PMID: 24580888; PMC4140963.
  • Desplats P, Dumaop W, Cronin P, Gianella S, Woods S, Letendre S, Smith D, Masliah E, Grant I. Epigenetic alterations in the brain associated with HIV-1 infection and methamphetamine dependence. PLoS One. 2014 Jul 23; 9(7):e102555. doi: 10.1371/journal.pone.0102555. PMID: 25054922; PMC4108358.
  • Ann HW, Jeon YD, Ahn JY, Ku NS, Kim JM, Shin N-Y, Smith DM, Choi JY, Jun S, Ahn M-Y, Han S, Jung IY. Clinical Usefulness of Brain Functional MRI for Diagnosing HIV-Associated Neurocognitive Disorder in HIV-Infected Patients. Open Forum Infectious Diseases. 2015;2(suppl_1). doi: 10.1093/ofid/ofv133.1215.
  • Orlov M, Vaida F, Williamson K, Deng Q, Smith DM, Duffy PE, Schooley RT. Antigen-presenting phagocytic cells ingest malaria parasites and increase HIV replication in a tumor necrosis factor α-dependent manner. J Infect Dis. 2014 Nov 15; 210(10):1562-72. doi: 10.1093/infdis/jiu317. PMID: 24903666; PMC4215075.
  • Chaillon A, Gianella S, Wertheim JO, Richman DD, Mehta SR, Smith DM. HIV migration between blood and cerebrospinal fluid or semen over time. J Infect Dis. 2014 May 15; 209(10):1642-52. doi: 10.1093/infdis/jit678. PMID: 24302756; PMC3997580.
  • Tilghman MW, Pérez-Santiago J, Osorio G, Little SJ, Richman DD, Mathews WC, Haubrich RH, Smith DM. Community HIV-1 drug resistance is associated with transmitted drug resistance. HIV Med. 2014 Jul; 15(6):339-46. doi: 10.1111/hiv.12122. PMID: 24417811; PMC4055747.
  • Grant I, Franklin DR Jr, Deutsch R, Woods SP, Vaida F, Ellis RJ, Letendre SL, Marcotte TD, Atkinson JH, Collier AC, Marra CM, Clifford DB, Gelman BB, McArthur JC, Morgello S, Simpson DM, McCutchan JA, Abramson I, Gamst A, Fennema-Notestine C, Smith DM, Heaton RK; CHARTER Group.. Asymptomatic HIV-associated neurocognitive impairment increases risk for symptomatic decline. Neurology. 2014 Jun 10; 82(23):2055-62. doi: 10.1212/WNL.0000000000000492. PMID: 24814848; PMC4118496.
  • Hepler NL, Scheffler K, Weaver S, Murrell B, Richman DD, Burton DR, Poignard P, Smith DM, Kosakovsky Pond SL. IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform. PLoS Comput Biol. 2014 Sep 25; 10(9):e1003842. doi: 10.1371/journal.pcbi.1003842. PMID: 25254639; PMC4177671.
  • Rotta I, Raboni SM, Ribeiro CE, Riedel M, Winhescki Mda G, Smith DM, Ellis RJ, de Almeida SM. Cerebrospinal fluid can be used for HIV genotyping when it fails in blood. Arq Neuropsiquiatr. 2014 Jul; 72(7):506-9. DOI: 10.1590/0004-282×20140093. PMID: 25054982; PMC4139176.
  • King HL, Keller SB, Giancola MA, Rodriguez DA, Chau JJ, Young JA, Little SJ, Smith DM. Pre- exposure prophylaxis accessibility research and evaluation (PrEPARE Study). AIDS Behav. 2014 Sep; 18(9):1722-5. doi: 10.1007/s10461-014-0845-5. PMID: 25017425; PMC4127131.
  • Wertheim JO, Smith MD, Smith DM, Scheffler K, Kosakovsky Pond SL. Evolutionary origins of human herpes simplex viruses 1 and 2. Mol Biol Evol. 2014 Sep; 31(9):2356-64. doi: 10.1093/molbev/msu185. Epub 2014 Jun 10. PMID: 24916030; PMC4137711.
  • Little SJ, Kosakovsky Pond SL, Anderson CM, Young JA, Wertheim JO, Mehta SR, May S, Smith DM. Using HIV networks to inform real time prevention interventions. PLoS One. 2014 Jun 5; 9(6):e98443. doi: 10.1371/journal.pone.0098443. PMID: 24901437; PMC4047027.
  • Dillon SM, Lee EJ, Kotter CV, Austin GL, Dong Z, Hecht DK, Gianella S, Siewe B, Smith DM, Landay AL, Robertson CE, Frank DN, Wilson CC. An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia. Mucosal Immunol. 2014 Jul; 7(4):983-94. doi: 10.1038/mi.2013.116. PMID: 24399150; PMC4062575.
  • Kim SB, Kim HW, Kim HS, Ann HW, Kim JK, Choi H, Kim MH, Song JE, Ahn JY, Ku NS, Oh DH, Kim YC, Jeong SJ, Han SH, Kim JM, Smith DM, Choi JY. Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection in Seoul, South Korea. Scand J Infect Dis. 2014 Feb; 46(2):136-40. doi: 10.3109/00365548.2013.851415. PMID: 24228824; PMC3894056.
  • Tilghman MW, Bhattacharya J, Deshpande S, Ghate M, Espitia S, Grant I, Marcotte TD, Smith D, Mehendale S. Genetic attributes of blood-derived subtype-C HIV-1 tat and env in India and neurocognitive function. J Med Virol. 2014 Jan; 86(1):88-96. doi: 10.1002/jmv.23816. PMID: 24150902; PMC3872113.
  • Saravanan S, Madhavan V, Velu V, Murugavel KG, Waldrop G, Solomon SS, Balakrishnan P, Kumarasamy N, Smith DM, Mayer KH, Solomon S, Thyagarajan SP. High prevalence of hepatitis delta virus among patients with chronic hepatitis B virus infection and HIV-1 in an intermediate hepatitis B virus endemic region. J Int Assoc Provid AIDS Care. 2014 Jan-Feb; 13(1):85-90. doi: 10.1177/2325957413488166. PMID: 23722085; PMC4114572.
  • Karris MY, Kao YT, Patel D, Dawson M, Woods SP, Vaida F, Spina C, Richman D, Little S, Smith DM. Predictors of virologic response in persons who start antiretroviral therapy during recent HIV infection. AIDS. 2014 Mar 27; 28(6):841-9. doi: 10.1097/QAD.0000000000000149. PMID: 24401640; PMC4049563.
  • Jeong SJ, Kim MH, Song JE, Ahn JY, Kim SB, Ann HW, Kim JK, Choi H, Ku NS, Han SH, Kim JM, Smith DM, Kim HS, Choi JY. Short communication: prospective comparison of qualitative versus quantitative polymerase chain reaction for monitoring virologic treatment failure in HIV- infected patients. AIDS Res Hum Retroviruses. 2014 Aug; 30(8):827-9. doi: 10.1089/AID.2013.0227. PMID: 24724838; PMC4118713.
  • Tatro ET, Purnajo I, Richman DD, Smith DM, Gianella S. Antibody response to Achromobacter xylosoxidans during HIV infection is associated with lower CD4 levels and increased lymphocyte activation. Clin Vaccine Immunol. 2014 Jan; 21(1):46-50. doi: 10.1128/CVI.00553-13. PMID: 24173027; PMC3910916.
  • Chaillon A, Gianella S, Vazquez H, Ignacio C, Zweig AC, Richman DD, Smith DM. Novel codon insert in HIV type 1 clade B reverse transcriptase associated with low-level viremia during antiretroviral therapy. AIDS Res Hum Retroviruses. 2014 Feb; 30(2):165-9. doi: 10.1089/AID.2013.0202. PMID: 24020934; PMC3910474.
  • Wertheim JO, Leigh Brown AJ, Hepler NL, Mehta SR, Richman DD, Smith DM, Kosakovsky Pond SL. The global transmission network of HIV-1. J Infect Dis. 2014 Jan 15; 209(2):304-13. doi: 10.1093/infdis/jit524. PMID: 24151309; PMC3873788.
  • Wagner GA, Pacold ME, Kosakovsky Pond SL, Caballero G, Chaillon A, Rudolph AE, Morris SR, Little SJ, Richman DD, Smith DM. Incidence and prevalence of intrasubtype HIV-1 dual infection in at-risk men in the United States. J Infect Dis. 2014 Apr 1; 209(7):1032-8. doi: 10.1093/infdis/jit633. Erratum in: J Infect Dis. 2014 Oct 1;210(7):1166. PMID: 24273040; PMC3952674.
  • Gianella S, Morris SR, Tatro E, Vargas MV, Haubrich RH, Daar ES, Dube MP, Richman DD, Little SJ, Smith DM. Virologic correlates of anti-CMV IgG levels in HIV-1-infected men. J Infect Dis. 2014 Feb 1; 209(3):452-6. doi: 10.1093/infdis/jit434. PMID: 23964106; PMC3883163.

2013

  • Weber E, Morgan EE, Iudicello JE, Blackstone K, Grant I, Ellis RJ, Letendre SL, Little S, Morris S, Smith DM, Moore DJ, Woods SP; TMARC Group. Substance use is a risk factor for neurocognitive deficits and neuropsychiatric distress in acute and early HIV infection. J Neurovirol. 2013 Feb; 19(1):65-74. doi: 10.1007/s13365-012-0141-y. PMID: 23250704; PMC3568179.
  • Morgan EE, Woods SP, Letendre SL, Franklin DR, Bloss C, Goate A, Heaton RK, Collier AC, Marra CM, Gelman BB, McArthur JC, Morgello S, Simpson DM, McCutchan JA, Ellis RJ, Abramson I, Gamst A, Fennema-Notestine C, Smith DM, Grant I, Vaida F, Clifford DB; CNS HIV Antiretroviral Therapy Effects Research (CHARTER) Group. Apolipoprotein E4 genotype does not increase risk of HIV-associated neurocognitive disorders. J Neurovirol. 2013 Apr; 19(2):150-6. doi: 10.1007/s13365-013-0152-3. PMID: 23408335; PMC3668779.
  • Tang MW, Rhee SY, Bertagnolio S, Ford N, Holmes S, Sigaloff KC, Hamers RL, de Wit TF, Fleury HJ, Kanki PJ, Ruxrungtham K, Hawkins CA, Wallis CL, Stevens W, van Zyl GU, Manosuthi W, Hosseinipour MC, Ngo-Giang-Huong N, Belec L, Peeters M, Aghokeng A, Bunupuradah T, Burda S, Cane P, Cappelli G, Charpentier C, Dagnra AY, Deshpande AK, El-Katib Z, Eshleman SH, Fokam J, Gody JC, Katzenstein D, Koyalta DD, Kumwenda JJ, Lallemant M, Lynen L, Marconi VC, Margot NA, Moussa S, Ndung’u T, Nyambi PN, Orrell C, Schapiro JM, Schuurman R, Sirivichayakul S, Smith D, Zolfo M, Jordan MR, Shafer RW. Nucleoside reverse transcriptase inhibitor resistance mutations associated with first-line stavudine-containing antiretroviral therapy: programmatic implications for countries phasing out stavudine. J Infect Dis. 2013 Jun 15; 207 Suppl 2:S70-7. doi: 10.1093/infdis/jit114. PMID: 23687292; PMC3657117.
  • Doyle KL, Morgan EE, Morris S, Smith DM, Little S, Iudicello JE, Blackstone K, Moore DJ, Grant I, Letendre SL, Woods SP; Translational Methamphetamine AIDS Research Center (TMARC) Group. Real-world impact of neurocognitive deficits in acute and early HIV infection. J Neurovirol. 2013 Dec; 19(6):565-73. doi: 10.1007/s13365-013-0218-2. PMID: 24277439; PMC3865175.
  • Perez-Santiago J, Gianella S, Massanella M, Spina CA, Karris MY, Var SR, Patel D, Jordan PS, Young JA, Little SJ, Richman DD, Smith DM. Gut Lactobacillales are associated with higher CD4 and less microbial translocation during HIV infection. AIDS. 2013; 27(12):1921-31. DOI: 10.1097/qad.0b013e3283611816. PMID: 24180001; PMC3816380.
  • Chaillon A, Wagner GA, Hepler NL, Little SJ, Kosakovsky Pond SL, Caballero G, Pacold ME, Phung P, Wrin T, Richman DD, Wertheim JO, Smith DM. Dynamics of viral evolution and neutralizing antibody response after HIV-1 superinfection. J Virol. 2013 Dec; 87(23):12737-44. doi: 10.1128/JVI.02260-13. PMID: 24049166; PMC3838120.
  • Desplats P, Dumaop W, Smith D, Adame A, Everall I, Letendre S, Ellis R, Cherner M, Grant I, Masliah E. Molecular and pathologic insights from latent HIV-1 infection in the human brain. Neurology. 2013 Apr 9; 80(15):1415-23. doi: 10.1212/WNL.0b013e31828c2e9e. PMID: 23486877; PMC3662272.
  • Noormahomed EV, Mocumbi AO, Preziosi M, Damasceno A, Bickler S, Smith DM, Funzamo C, Aronoff-Spencer E, Badaró R, Mabila F, Bila D, Nguenha A, Do Rosário V, Benson CA, Schooley RT, Patel S, Ferrão LJ, Carrilho C. Strengthening research capacity through the medical education partnership initiative: the Mozambique experience. Hum Resour Health. 2013 Dec 5; 11:62. doi: 10.1186/1478-4491-11-62. PMID: 24304706; PMC3895849.
  • de Almeida SM, Ribeiro CE, de Pereira AP, Badiee J, Cherner M, Smith D, Maich I, Raboni SM, Rotta I, Barbosa FJ, Heaton RK, Umlauf A, Ellis RJ. Neurocognitive impairment in HIV-1 clade C- versus B-infected individuals in Southern Brazil. J Neurovirol. 2013 Dec; 19(6):550-6. doi: 10.1007/s13365-013-0215-5. PMID: 24277437; PMC3923762.
  • Yuan L, Qiao L, Wei F, Yin J, Liu L, Ji Y, Smith D, Li N, Chen D. Cytokines in CSF correlate with HIV-associated neurocognitive disorders in the post-HAART era in China. J Neurovirol. 2013 Apr; 19(2):144-9. doi: 10.1007/s13365-013-0150-5. PMID: 23389619; PMC4363104.
  • Kim H, Ku NS, Kim SB, Jeong SJ, Han SH, Kim JM, Smith DM, Choi JY. Simulation of pooled nucleic acid treatment failure during HIV infection in Seoul, South Korea. J Acquir Immune Defic Syndr. 2013 Mar 1; 62(3):e104-5. doi: 10.1097/QAI.0b013e31827e8cc8. PMID: 23924640; PMC3873092.
  • Morris SR, Smith DM, Little SJ, Gianella S. Reply to Mounzer and DiNubile. J Infect Dis. 2013 Aug 15; 208(4):711-2. doi: 10.1093/infdis/jit218. PMID: 23667136; PMC3719903.
  • Wagner GA, Pacold ME, Vigil E, Caballero G, Morris SR, Pond SLK, Little SJ, Richman DD, Gianella S, Smith DM. Using ultradeep pyrosequencing to study HIV-1 coreceptor usage in primary and dual infection. Journal of Infectious Diseases. 2013; 208(2):271-4. DOI: 10.1093/infdis/jit168. PMID: 23599311; PMC3685231.
  • Morris SR, Woods SP, Deutsch R, Little SJ, Wagner G, Morgan EE, Heaton RK, Letendre SL, Grant I, Smith DM. Dual-mixed HIV-1 coreceptor tropism and HIV-associated neurocognitive deficits. J Neurovirol. 2013 Oct; 19(5):488-94. DOI: 10.1007/s13365-013-0203-9. PMID: 24078557; PMC3921071.
  • Hightower GK, May SJ, Pérez-Santiago J, Pacold ME, Wagner GA, Little SJ, Richman DD, Mehta SR, Smith DM, Pond SLK. HIV-1 clade B pol evolution following primary infection. PloS one. 2013; 8(6):e68188. DOI: 10.1371/journal.pone.0068188. PMID: 23840830; PMC3695957.
  • Joseph J, Achim CL, Boivin MJ, Brew BJ, Clifford DB, Colosi DA, Ellis RJ, Heaton RK, Gallo-Diop A, Grant I, Kanmogne GD, Kumar M, Letendre S, Marcotte TD, Nath A, Pardo CA, Paul RH, Pulliam L, Robertson K, Royal W, 3rd, Sacktor N, Sithinamsuwan P, Smith DM, Valcour V, Wigdahl B, Wood C. Global NeuroAIDS roundtable. Journal of neurovirology. 2013;19(1):1-9. Epub 01/26. doi: 10.1007/s13365-012-0143-9. PubMed PMID: 23354550.
  • Saravanan S, Madhavan V, Balakrishnan P, Smith DM, Solomon SS, Sivamalar S, Poongulali S, Kumarasamy N, Schooley RT, Solomon S, Kantor R. Darunavir is a good third-line antiretroviral agent for HIV type 1-infected patients failing second-line protease inhibitor-based regimens in South India. AIDS Res Hum Retroviruses. 2013 Mar; 29(3):630-2. doi: 10.1089/AID.2011.0334. PMID: 23045961; PMC3581023.
  • Wertheim JO, Scheffler K, Choi JY, Smith DM, Kosakovsky Pond SL. Phylogenetic relatedness of HIV-1 donor and recipient populations. J Infect Dis. 2013 Apr; 207(7):1181-2. doi: 10.1093/infdis/jit021. PMID: 23315327; PMC3583277.
  • Fierer DS, Dieterich DT, Fiel MI, Branch AD, Marks KM, Fusco DN, Hsu R, Smith DM, Fierer J. Rapid progression to decompensated cirrhosis, liver transplant, and death in HIV-infected men after primary hepatitis C virus infection. Clin Infect Dis. 2013 Apr; 56(7):1038-43. doi: 10.1093/cid/cis1206. PMID: 23264364; PMC3588118.
  • Gianella S, Morris SR, Vargas MV, Young JA, Callahan B, Richman DD, Little SJ, Smith DM. Role of seminal shedding of herpesviruses in HIV Type 1 Transmission. J Infect Dis. 2013 Jan 15; 207(2):257-61. doi: 10.1093/infdis/jis683. PMID: 23148284; PMC3532824.
  • Gianella S, Anderson CM, Vargas MV, Richman DD, Little SJ, Morris SR, Smith DM. Cytomegalovirus DNA in semen and blood is associated with higher levels of proviral HIV DNA. J Infect Dis. 2013 Mar 15; 207(6):898-902. doi: 10.1093/infdis/jis777. PMID: 23275608; PMC3571441.
  • Gianella S, Smith DM, Vargas MV, Little SJ, Richman DD, Daar ES, Dube MP, Zhang F, Ginocchio CC, Haubrich RH, Morris SR; CCTG 592 Team. Shedding of HIV and human herpesviruses in the semen of effectively treated HIV-1-infected men who have sex with men. Clin Infect Dis. 2013 Aug; 57(3):441-7. doi: 10.1093/cid/cit252. PMID: 23595831; PMC3703105.
  • Gianella S, Morris SR, Anderson C, Spina CA, Vargas MV, Young JA, Richman DD, Little SJ, Smith DM. Herpes viruses and HIV-1 drug resistance mutations influence the virologic and immunologic milieu of the male genital tract. AIDS. 2013 Jan 2; 27(1):39-47. doi: 10.1097/QAD.0b013e3283573305. PMID: 22739399; PMC3769229.
  • Nguyen A, Rossi S, Croteau D, Best BM, Clifford D, Collier AC, Gelman B, Marra C, McArthur J, McCutchan JA, Morgello S, Simpson D, Ellis RJ, Grant I, Capparelli E, Letendre S, Group C. Etravirine in CSF is highly protein bound. J Antimicrob Chemother. 2013;68(5):1161-8. Epub 2013/01/22. doi: 10.1093/jac/dks517. PubMed PMID: 23335197; PubMed Central PMCID: PMC3625433.
  • Le T, Wright EJ, Smith DM, He W, Catano G, Okulicz JF, Young JA, Clark RA, Richman DD, Little SJ, Ahuja SK. Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy. N Engl J Med. 2013 Jan 17; 368(3):218-30. doi: 10.1056/NEJMoa1110187. PMID: 23323898; PMC3657555.

2012

  • Hightower GK, Wong JK, Letendre SL, Umlauf AA, Ellis RJ, Ignacio CC, Heaton RK, Collier AC, Marra CM, Clifford DB, Gelman BB, McArthur JC, Morgello S, Simpson DM, McCutchan JA, Grant I, Little SJ, Richman DD, Kosakovsky Pond SL, Smith DM, Group CS. Higher HIV-1 genetic diversity is associated with AIDS and neuropsychological impairment. Virology. 2012;433(2):498- 505. Epub 2012/09/25. doi: 10.1016/j.virol.2012.08.028. PubMed PMID: 22999095; PubMed Central PMCID: PMC3466337.
  • Orlov M, Vaida F, Finney OC, Smith DM, Talley AK, Wang R, Kappe SH, Deng Q, Schooley RT, Duffy PE. P. falciparum enhances HIV replication in an experimental malaria challenge system. PloS one. 2012;7(6):e39000. Epub 2012/06/30. doi: 10.1371/journal.pone.0039000. PubMed PMID: 22745697; PubMed Central PMCID: PMCPMC3383717.
  • Saravanan S, Madhavan V, Solomon SS, Kantor R, Katzenstein D, Sivamalar S, Kumarasamy N, Smith DM, Mayer KH, Solomon S, Balakrishnan P. Reverse transcriptase substitution at codons 208 and 228 among treatment-experienced HIV-1 subtype-C-infected Indian patients is strongly associated with thymidine analogue mutations. Journal of acquired immune deficiency syndromes (1999). 2012;59(2):e26-7. Epub 2012/01/17. doi: 10.1097/QAI.0b013e31823e2d2b. PubMed PMID: 22245718; PubMed Central PMCID: PMCPMC3259528.
  • Mehta SR, Kosakovsky Pond SL, Young JA, Richman D, Little S, Smith DM. Associations between phylogenetic clustering and HLA profile among HIV-infected individuals in San Diego, California. J Infect Dis. 2012 May 15; 205(10):1529-33. doi: 10.1093/infdis/jis231. PMID: 22448013; PMC3415817.
  • Choi JY, Hightower GK, Wong JK, Heaton R, Woods S, Grant I, Marcotte TD, Ellis RJ, Letendre SL, Collier AC, Marra CM, Clifford DB, Gelman BB, McArthur JC, Morgello S, Simpson DM, McCutchan JA, Richman DD, Smith DM, Charter G. Genetic features of cerebrospinal fluid-derived subtype B HIV-1 tat. J Neurovirol. 2012;18(2):81-90. Epub 2012/04/25. doi: 10.1007/s13365-011-0059-9. PubMed PMID: 22528397; PubMed Central PMCID: PMCPMC3572198.
  • Shi Y, Wei F, Hu D, Li Q, Smith D, Li N, Chen D. Mutations in the major hydrophilic region (MHR) of hepatitis B virus genotype C in North China. Journal of medical virology. 2012; 84(12):1901-6. DOI: 10.1002/jmv.23419. PMID: 23080494; PMC3747822.
  • Gianella S, Mehta SR, Young JA, Vargas MV, Little SJ, Richman DD, Pond SLK, Smith DM. Sexual transmission of predicted CXCR4-tropic HIV-1 likely originating from the source partner’s seminal cells. Virology. 2012; 434(1):2-4. DOI: 10.1016/j.virol.2012.09.010. PMID: 23040890; PMC3485073.
  • Homann S, Smith D, Little S, Richman D, Guatelli J. Upregulation of BST-2/Tetherin by HIV infection in vivo. J Virol. 2011 Oct; 85(20):10659-68. doi: 10.1128/JVI.05524-11. PMID: 21849457; PMC3187519.
  • Tilghman MW, May S, Pérez-Santiago J, Ignacio CC, Little SJ, Richman DD, Smith DM. A combined screening platform for HIV treatment failure and resistance. PloS one. 2012; 7(4):e35401. DOI: 10.1371/journal.pone.0035401. PMID: 22563383; PMC3338506.
  • Saravanan S, Madhavan V, Kantor R, Sivamalar S, Gomathi S, Solomon SS, Kumarasamy N, Smith DM, Schooley RT, Solomon S. Unusual Insertion and deletion at codon 67 and 69 of HIV type 1 subtype C reverse transcriptase among first-line highly active antiretroviral treatment-failing South Indian patients: association with other resistance mutations. AIDS research and human retroviruses. 2012; 28(12):1763-5. DOI: 10.1089/AID.2011.0331. PMID: 22404052; PMC3505055.
  • Bharti AR, Saravanan S, Madhavan V, Smith DM, Sharma J, Balakrishnan P, Letendre SL, Kumarasamy N. Correlates of HIV and malaria co-infection in Southern India. Malar J. 2012;11:306. Epub 2012/09/05. doi: 10.1186/1475-2875-11-306. PubMed PMID: 22943054; PubMed Central PMCID: PMCPMC3504568.
  • Aldous JL, Pond SK, Poon A, Jain S, Qin H, Kahn JS, Kitahata M, Rodriguez B, Dennis AM, Boswell SL, Haubrich R, Smith DM. Characterizing HIV transmission networks across the United States. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2012;55(8):1135-43. Epub 2012/07/13. doi: 10.1093/cid/cis612. PubMed PMID: 22784872; PubMed Central PMCID: PMCPMC3529609.
  • Gianella S, Mehta SR, Strain MC, Young JA, Vargas MV, Little SJ, Richman DD, Pond SLK, Smith DM. Impact of seminal cytomegalovirus replication on HIV‐1 dynamics between blood and semen. Journal of medical virology. 2012; 84(11):1703-9. doi: 10.1002/jmv.23398. PMID: 22997072. PMC3472447.
  • Zhang Y, Qiao L, Ding W, Wei F, Zhao Q, Wang X, Shi Y, Li N, Smith D, Chen D. An initial screening for HIV-associated neurocognitive disorders of HIV-1 infected patients in China. Journal of neurovirology. 2012; 18(2):120-6. DOI: 10.1007/s13365-012-0089-y. PMID: 22411002; PMC3859527.
  • Karris MY, Anderson CM, Morris SR, Smith DM, Little SJ. Cost savings associated with testing of antibodies, antigens, and nucleic acids for diagnosis of acute HIV infection. Journal of clinical microbiology. 2012; 50(6):1874-8. DOI: 10.1128/JCM.00106-12. PMID: 22442319; PMC3372146.
  • Pacold ME, Pond SL, Wagner GA, Delport W, Bourque DL, Richman DD, Little SJ, Smith DM. Clinical, virologic, and immunologic correlates of HIV-1 intraclade B dual infection among men who have sex with men. AIDS. 2012 Jan 14; 26(2):157-65. doi: 10.1097/QAD.0b013e32834dcd26. PMID: 22045341; PMC3807679.
  • Fisher R, van Zyl GU, Travers SA, Kosakovsky Pond SL, Engelbrech S, Murrell B, Scheffler K, Smith D. Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen. J Virol. 2012 Jun; 86(11):6231-7. doi: 10.1128/JVI.06541-11. PMID: 22457522; PMC3372173.
  • Gianella S, Strain MC, Rought SE, Vargas MV, Little SJ, Richman DD, Spina CA, Smith DM. Associations between virologic and immunologic dynamics in blood and in the male genital tract. J Virol. 2012 Feb; 86(3):1307-15. doi: 10.1128/JVI.06077-11. PMID: 22114342; PMC3264378.

2011

  • Jeong J, Kim SR, Lee SH, Lim JH, Choi JI, Park JS, Chang CL, Choi JY, Richman DD, Smith DM. The Use of High Performance Liquid Chromatography to Speciate and Characterize the Epidemiology of Mycobacteria. Lab Med. 2011;42(10):612-7. Epub 2011/10/01. doi: 10.1309/LMDDEHPSYE6ZDM3C. PubMed PMID: 24443588; PubMed Central PMCID: PMCPMC3892985.
  • Saravanan S, Madhavan V, Balakrishnan P, Solomon SS, Kumarasamy N, Mayer KH, Waldrop G, Solomon S, Smith DM. HIV-1 reverse transcriptase nucleotide substitutions in subtype C- infected, drug-naive, and treatment-experienced patients in South India. Journal of acquired immune deficiency syndromes (1999). 2011;58(3):e94-5. Epub 2011/08/31. doi: 10.1097/QAI.0b013e318232a13c. PubMed PMID: 21876445; PubMed Central PMCID: PMCPMC5091647.
  • Kim D, Lyoo KS, Smith D, Hur W, Hong SW, Sung PS, Yoon SK, Mehta S. Number of mutations within CTL-defined epitopes of the hepatitis B Virus (HBV) core region is associated with HBV disease progression. J Med Virol. 2011;83(12):2082-7. Epub 2011/10/21. doi: 10.1002/jmv.22226. PubMed PMID: 22012714; PubMed Central PMCID: PMCPMC3872118.
  • Saravanan S, Madhavan V, Murugavel KG, Balakrishnan P, Solomon SS, Umapathy S, Kantor R, Kumarasamy N, Yepthomi T, Smith DM, Mayer KH, Solomon S. The association between HIV-1 subtype C antiretroviral resistance and HLA prevalence in southern India. Journal of acquired immune deficiency syndromes (1999). 2011;57(1):e17-9. Epub 2011/07/22. doi: 10.1097/QAI.0b013e3182169050. PubMed PMID: 21775932; PubMed Central PMCID: PMCPMC3154011.
  • Karris MA, Smith DM. Tissue-specific HIV-1 infection: why it matters. Future Virol. 2011;6(7):869- 82. Epub 2011/07/01. doi: 10.2217/fvl.11.48. PubMed PMID: 23946764; PubMed Central PMCID: PMCPMC3741055.
  • Mehta SR, Nguyen VT, Osorio G, Little S, Smith DM. Evaluation of pooled rapid HIV antibody screening of patients admitted to a San Diego Hospital. J Virol Methods. 2011;174(1-2):94-8. Epub 2011/04/26. doi: 10.1016/j.jviromet.2011.04.002. PubMed PMID: 21513744; PubMed Central PMCID: PMCPMC3095723.
  • Keller SB, Smith DM. The price of tenofovir-emtricitabine undermines the cost-effectiveness and advancement of pre-exposure prophylaxis. AIDS (London, England). 2011;25(18):2308-10. Epub 2011/11/10. doi: 10.1097/QAD.0b013e32834d3cab. PubMed PMID: 22067201; PubMed Central PMCID: PMCPMC3874210.
  • Mehta SR, Wertheim JO, Delport W, Ene L, Tardei G, Duiculescu D, Pond SL, Smith DM. Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania. Infect Genet Evol. 2011;11(5):975-9. Epub 2011/03/29. doi: 10.1016/j.meegid.2011.03.009. PubMed PMID: 21439403; PubMed Central PMCID: PMCPMC3104099.
  • Tilghman MW, Guerena DD, Licea A, Perez-Santiago J, Richman DD, May S, Smith DM. Pooled nucleic acid testing to detect antiretroviral treatment failure in Mexico. Journal of acquired immune deficiency syndromes (1999). 2011;56(3):e70-4. Epub 2010/12/03. doi: 10.1097/QAI.0b013e3181ff63d7. PubMed PMID: 21124228; PubMed Central PMCID: PMCPMC3039117.
  • Moore DJ, Letendre SL, Morris S, Umlauf A, Deutsch R, Smith DM, Little S, Rooney A, Franklin DR, Gouaux B, Leblanc S, Rosario D, Fennema-Notestine C, Heaton RK, Ellis RJ, Atkinson JH, Grant I, Group C. Neurocognitive functioning in acute or early HIV infection. J Neurovirol. 2011;17(1):50-7. Epub 2010/12/18. doi: 10.1007/s13365-010-0009-y. PubMed PMID: 21165782; PubMed Central PMCID: PMCPMC3032208.
  • van Zyl GU, Preiser W, Potschka S, Lundershausen AT, Haubrich R, Smith D. Pooling strategies to reduce the cost of HIV-1 RNA load monitoring in a resource-limited setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2011;52(2):264- 70. Epub 2011/02/04. doi: 10.1093/cid/ciq084. PubMed PMID: 21288854; PubMed Central PMCID: PMCPMC3106253.
  • Homann S, Smith D, Little S, Richman D, Guatelli J. Upregulation of BST-2/Tetherin by HIV infection in vivo. Journal of virology. 2011;85(20):10659-68. Epub 2011/08/19. doi: 10.1128/JVI.05524-11. PubMed PMID: 21849457; PubMed Central PMCID: PMCPMC3187519.
  • Gianella S, Delport W, Pacold ME, Young JA, Choi JY, Little SJ, Richman DD, Kosakovsky Pond SL, Smith DM. Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants. Journal of virology. 2011;85(16):8359-67. Epub 2011/06/03. doi: 10.1128/JVI.02582-10. PubMed PMID: 21632754; PubMed Central PMCID: PMCPMC3147985.

2010 and Earlier

  • Rieg G, Butler DM, Smith DM, Daar ES. Seminal plasma HIV levels in men with asymptomatic sexually transmitted infections. Int J STD AIDS. 2010;21(3):207-8. Epub 2010/03/11. doi: 10.1258/ijsa.2009.009331. PubMed PMID: 20215629; PubMed Central PMCID: PMC2917381.
  • Fierer DS, Dieterich DT, Fiel MI, Branch AD, Marks KM, Fusco DN, Hsu R, Smith DM, Fierer J. Rapid progression to decompensated cirrhosis, liver transplant, and death in HIV-infected men after primary hepatitis C virus infection. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2013;56(7):1038-43. Epub 2012/12/25. doi: 10.1093/cid/cis1206. PubMed PMID: 23264364; PubMed Central PMCID: PMC3588118.
  • Smith D, Delport W, Butler D, Little S, Richman D, Pond SK. Response to Comment on “The Origins of Sexually Transmitted HIV Among Men Who Have Sex with Men”. Sci Transl Med. 2010;2(50):501r1. Epub 2011/05/03. doi: 10.1126/scitranslmed.3001473. PubMed PMID: 21532938; PubMed Central PMCID: PMC3083242.
  • Mehta SR, Delport W, Brouwer KC, Espitia S, Patterson T, Pond SK, Strathdee SA, Smith DM. The relatedness of HIV epidemics in the United States-Mexico border region. AIDS research and human retroviruses. 2010;26(12):1273-7. Epub 2010/10/28. doi: 10.1089/aid.2010.0021. PubMed PMID: 20977301; PubMed Central PMCID: PMCPMC3011998.
  • Woelk CH, Beliakova-Bethell N, Goicoechea M, Zhao Y, Du P, Rought SE, Lozach J, Perez- Santiago J, Richman DD, Smith DM, Little SJ. Gene expression before HAART initiation predicts HIV-infected individuals at risk of poor CD4+ T-cell recovery. AIDS (London, England). 2010;24(2):217-22. Epub 2009/12/03. doi: 10.1097/QAD.0b013e328334f1f0. PubMed PMID: 19952713; PubMed Central PMCID: PMCPMC2915828.
  • Manosuthi W, Butler DM, Perez-Santiago J, Poon AF, Pillai SK, Mehta SR, Pacold ME, Richman DD, Pond SK, Smith DM. Protease poly morphisms in HIV-1 subtype CRF01_AE represent selection by antiretroviral therapy and host immune pressure. AIDS (London, England). 2010;24(3):411-6. Epub 2009/12/17. doi: 10.1097/QAD.0b013e3283350eef. PubMed PMID: 20009919; PubMed Central PMCID: PMC2913588.
  • Morris SR, Little SJ, Cunningham T, Garfein RS, Richman DD, Smith DM. Evaluation of an HIV nucleic acid testing program with automated Internet and voicemail systems to deliver results. Ann Intern Med. 2010;152(12):778-85. Epub 2010/06/16. doi: 10.7326/0003-4819-152-12- 201006150-00005. PubMed PMID: 20547906; PubMed Central PMCID: PMCPMC2922925.
  • Manosuthi W, Butler DM, Chantratita W, Sukasem C, Richman DD, Smith DM. Patients infected with HIV type 1 subtype CRF01_AE and failing first-line nevirapine- and efavirenz-based regimens demonstrate considerable cross-resistance to etravirine. AIDS research and human retroviruses. 2010;26(6):609-11. Epub 2010/05/29. doi: 10.1089/aid.2009.0107. PubMed PMID: 20507208; PubMed Central PMCID: PMC2982719.
  • May S, Gamst A, Haubrich R, Benson C, Smith DM. Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection. Journal of acquired immune deficiency syndromes (1999). 2010;53(2):194-201. Epub 2009/09/23. doi: 10.1097/QAI.0b013e3181ba37a7. PubMed PMID: 19770802; PubMed Central PMCID: PMCPMC2915780.
  • Pacold M, Smith D, Little S, Cheng PM, Jordan P, Ignacio C, Richman D, Pond SK. Comparison of methods to detect HIV dual infection. AIDS research and human retroviruses. 2010;26(12):1291-8. Epub 2010/10/18. doi: 10.1089/aid.2010.0042. PubMed PMID: 20954840.
  • DeGruttola V, Smith DM, Little SJ, Miller V. Developing and evaluating comprehensive HIV infection control strategies: issues and challenges. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2010;50 Suppl 3(Suppl 3):S102-7. Epub 2010/04/20. doi: 10.1086/651480. PubMed PMID: 20397937; PubMed Central PMCID: PMCPMC2913596.
  • Butler DM, Delport W, Kosakovsky Pond SL, Lakdawala MK, Cheng PM, Little SJ, Richman DD, Smith DM. The origins of sexually transmitted HIV among men who have sex with men. Sci Transl Med. 2010;2(18):18re1. Epub 2010/04/08. doi: 10.1126/scitranslmed.3000447. PubMed PMID: 20371483; PubMed Central PMCID: PMC2945226.
  • Manosuthi W, Butler D, Chantratita W, Sukasem C, Richman D, Smith D, editors. Mutations associated with etravirine resistance among patients infected with HIV-1 subtype CRF01_AE and failing first-line nevirapine-and efavirenz-based regimens. Antiviral Therapy; 2009: Int Medical Press Ltd 2-4 Idol Lane, London EC3R 5DD, England.
  • Goicoechea M, Smith D, May S, Mathews C, Spina C. Prevalence and T-cell phenotype of slow HIV disease progressors with robust HIV replication. Journal of acquired immune deficiency syndromes (1999). 2009;52(2):299-301. Epub 2010/02/02. doi: 10.1097/QAI.0b013e3181b08d70. PubMed PMID: 20118679; PubMed Central PMCID: PMC2818087.
  • Jordan PS, Poon A, Eron J, Squires K, Ignacio C, Richman DD, Smith DM. A novel codon insert in protease of clade B HIV type 1. AIDS research and human retroviruses. 2009;25(5):547-50. Epub 2009/04/29. doi: 10.1089/aid.2008.0310. PubMed PMID: 19397401; PubMed Central PMCID: PMC2749665.
  • Mehta SR, MacGruder C, Looney D, Johns S, Smith DM. Differences in tuberculin reactivity as determined in a veterans administration employee health screening program. Clin Vaccine Immunol. 2009;16(4):541-3. Epub 2009/02/20. doi: 10.1128/CVI.00375-08. PubMed PMID: 19225075; PubMed Central PMCID: PMC2668276.
  • Butler DM, Pacold ME, Jordan PS, Richman DD, Smith DM. The efficiency of single genome amplification and sequencing is improved by quantitation and use of a bioinformatics tool. J Virol Methods. 2009;162(1-2):280-3. Epub 2009/08/25. doi: 10.1016/j.jviromet.2009.08.002. PubMed PMID: 19698751; PubMed Central PMCID: PMC2761514.
  • Nugent CT, Dockter J, Bernardin F, Hecht R, Smith D, Delwart E, Pilcher C, Richman D, Busch M, Giachetti C. Detection of HIV-1 in alternative specimen types using the APTIMA HIV-1 RNA Qualitative Assay. J Virol Methods. 2009;159(1):10-4. Epub 2009/05/16. doi: 10.1016/j.jviromet.2009.02.015. PubMed PMID: 19442838; PubMed Central PMCID: PMC2930826.
  • Bharti AR, Letendre SL, Patra KP, Vinetz JM, Smith DM. Malaria diagnosis by a polymerase chain reaction-based assay using a pooling strategy. Am J Trop Med Hyg. 2009;81(5):754-7. Epub 2009/10/29. doi: 10.4269/ajtmh.2009.09-0274. PubMed PMID: 19861605; PubMed Central PMCID: PMC2770880.
  • Hightower GK, Letendre SL, Cherner M, Gibson SA, Ellis RJ, Wolfson TJ, Gamst AC, Ignacio CC, Heaton RK, Grant I, Richman DD, Smith DM, Group H. Select resistance-associated mutations in blood are associated with lower CSF viral loads and better neuropsychological performance. Virology. 2009;394(2):243-8. Epub 2009/09/19. doi: 10.1016/j.virol.2009.08.007. PubMed PMID: 19762060; PubMed Central PMCID: PMC3046809.
  • Smith DM, Zarate S, Shao H, Pillai SK, Letendre SL, Wong JK, Richman DD, Frost SD, Ellis RJ, Group H. Pleocytosis is associated with disruption of HIV compartmentalization between blood and cerebral spinal fluid viral populations. Virology. 2009;385(1):204-8. Epub 2008/12/23. doi: 10.1016/j.virol.2008.11.010. PubMed PMID: 19100592; PubMed Central PMCID: PMC2794037.
  • Smith DM, May SJ, Perez-Santiago J, Strain MC, Ignacio CC, Haubrich RH, Richman DD, Benson CA, Little SJ. The use of pooled viral load testing to identify antiretroviral treatment failure. AIDS (London, England). 2009;23(16):2151-8. Epub 2009/09/05. doi: 10.1097/QAD.0b013e3283313ca9. PubMed PMID: 19730348; PubMed Central PMCID: PMC2915784.
  • Kosakovsky Pond SL, Smith DM. Are all subtypes created equal? The effectiveness of antiretroviral therapy against non-subtype B HIV-1. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2009;48(9):1306-9. Epub 2009/04/01. doi: 10.1086/598503. PubMed PMID: 19331584; PubMed Central PMCID: PMC3052852.
  • Smith DM, May SJ, Tweeten S, Drumright L, Pacold ME, Kosakovsky Pond SL, Pesano RL, Lie YS, Richman DD, Frost SD, Woelk CH, Little SJ. A public health model for the molecular surveillance of HIV transmission in San Diego, California. AIDS (London, England). 2009;23(2):225-32. Epub 2008/12/23. doi: 10.1097/QAD.0b013e32831d2a81. PubMed PMID: 19098493; PubMed Central PMCID: PMC2644048.
  • Ances BM, Sisti D, Vaida F, Liang CL, Leontiev O, Perthen JE, Buxton RB, Benson D, Smith DM, Little SJ, Richman DD, Moore DJ, Ellis RJ, group H. Resting cerebral blood flow: a potential biomarker of the effects of HIV in the brain. Neurology. 2009;73(9):702-8. Epub 2009/09/02. doi: 10.1212/WNL.0b013e3181b59a97. PubMed PMID: 19720977; PubMed Central PMCID: PMC2734291.
  • Little SJ, Frost SD, Wong JK, Smith DM, Pond SL, Ignacio CC, Parkin NT, Petropoulos CJ, Richman DD. Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection. Journal of virology. 2008;82(11):5510-8. Epub 2008/03/21. doi: 10.1128/JVI.02579-07. PubMed PMID: 18353964; PubMed Central PMCID: PMC2395184.
  • Liu L, May S, Richman DD, Hecht FM, Markowitz M, Daar ES, Routy JP, Margolick JB, Collier AC, Woelk CH, Little SJ, Smith DM. Comparison of algorithms that interpret genotypic HIV-1 drug resistance to determine the prevalence of transmitted drug resistance. AIDS (London, England). 2008;22(7):835-9. Epub 2008/04/23. doi: 10.1097/QAD.0b013e3282f5ff71. PubMed PMID: 18427201; PubMed Central PMCID: PMC2716722.
  • Smith DM. Active duty military personnel presenting for care at a Gay Men’s Health Clinic. J Homosex. 2008;54(3):277-9. Epub 2008/10/02. doi: 10.1080/00918360801982173. PubMed PMID: 18825864.
  • Cachay ER, Frost SD, Poon AF, Looney D, Rostami SM, Pacold ME, Richman DD, Little SJ, Smith DM. Herpes simplex virus type 2 acquisition during recent HIV infection does not influence plasma HIV levels. Journal of acquired immune deficiency syndromes (1999). 2008;47(5):592-6. Epub 2008/01/17. doi: 10.1097/QAI.0b013e318163bd87. PubMed PMID: 18197122; PubMed Central PMCID: PMC2630881.
  • Kosakovsky Pond SL, Poon AF, Zarate S, Smith DM, Little SJ, Pillai SK, Ellis RJ, Wong JK, Leigh Brown AJ, Richman DD, Frost SD. Estimating selection pressures on HIV-1 using phylogenetic likelihood models. Statistics in medicine. 2008;27(23):4779-89. Epub 2008/04/03. doi: 10.1002/sim.3192. PubMed PMID: 18381707; PubMed Central PMCID: PMC2634745.
  • Smith DM, Schooley RT. Running with scissors: using antiretroviral therapy without monitoring viral load. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2008;46(10):1598-600. Epub 2008/04/19. doi: 10.1086/587110. PubMed PMID: 18419496.
  • Butler DM, Smith DM, Cachay ER, Hightower GK, Nugent CT, Richman DD, Little SJ. Herpes simplex virus 2 serostatus and viral loads of HIV-1 in blood and semen as risk factors for HIV transmission among men who have sex with men. AIDS (London, England). 2008;22(13):1667- 71. Epub 2008/08/02. doi: 10.1097/QAD.0b013e32830bfed8. PubMed PMID: 18670228; PubMed Central PMCID: PMC2653089.
  • Little SJ, Frost SD, Wong JK, Smith DM, Pond SLK, Ignacio CC, Parkin NT, Petropoulos CJ, Richman DD. Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection. Journal of virology. 2008;82(11):5510-8. DOI: 10.1128/JVI.02579-07.
  • Little S, Parkin N, Chappey C, Smith D, Richman D, Frost S, editors. Differences in viral load and replication capacity in individuals harbouring virus with or without drug resistance. Antiviral Therapy; 2007: Int Medical Press Ltd 2-4 Idol Lane, London EC3R 5DD, England.
  • Hightower G, Letendre S, Cachay E, Cherner M, Gibson S, Ellis R, Richman D, Ignacio C, Smith D, editors. Antiretroviral resistance and neuropsychological performance among HIV-infected individuals. Antiviral Therapy; 2007: Int Medical Press Ltd 2-4 Idol Lane, London EC3R 5DD, England.
  • Goicoechea M, Smith D. Universal HIV testing: is it enough? Clinical Infectious Diseases. 2007;45(10):1375-6. doi:10.1086/522760.
  • Ances BM, Liang C, Buxton RB, Smith D, Little S, Letendre S, Richman D, Ellis R, editors. Differences in cerebral blood flow (CBF) and cerebral metabolic rate of oxygen consumption (CMRO2) in HIV+ patients compared to seronegative controls using quantitative functional magnetic resonance imaging (qfMRI). Journal of Neurovirology; 2007: Springer 233 Spring St, New York, NY 10013 USA.
  • Ances B, Liang C, Sisti D, Buxton R, Smith D, Little S, Letendre S, Richman D, Ellis R, editors. Cerebral blood flow (CBF) and cerebral metabolic rate of oxygen consumption (CMRO2) are elevated in both early and chronically infected HIV plus patients compared to seronegative controls using quantitative functional magnetic resonance imaging (qfMRI). Journal of Neurovirology; 2007: Taylor & Francis Inc 325 Chestnut St, Suite 800, Philadelphia, PA 19106 USA.
  • Ances B, Perthen J, Liang C, Leontiev O, Smith D, Little S, Richman D, Letendre S, Buxton R, Ellis R, editors. Acute and chronic HIV reduce the BOLD signal magnitude. Annals of Neurology; 2007: Wiley-Liss Div John Wiley & Sons Inc, 111 River St, Hoboken, NJ 07030 USA.
  • Cachay ER, Moini N, Kosakovsky Pond SL, Pesano R, Lie YS, Aiem H, Butler DM, Letendre S, Mathews WC, Smith DM. Active methamphetamine use is associated with transmitted drug resistance to non-nucleoside reverse transcriptase inhibitors in individuals with HIV infection of unknown duration. Open AIDS J. 2007;1:5-10. Epub 2008/10/17. doi: 10.2174/1874613600701010005. PubMed PMID: 18923691; PubMed Central PMCID: PMC2556194.
  • Noviello CM, Pond SLK, Lewis MJ, Richman DD, Pillai SK, Yang OO, Little SJ, Smith DM, Guatelli JC. Maintenance of Nef-mediated modulation of major histocompatibility complex class I and CD4 after sexual transmission of human immunodeficiency virus type 1. Journal of virology. 2007;81(9):4776-86. Epub 2007/02/28. doi: 10.1128/JVI.01793-06. PubMed PMID: 17329339; PubMed Central PMCID: PMC1900175.
  • Cachay ER, Frost SDW, Richman DD, Smith DM, Little SJ. Herpes simplex virus type 2 infection does not influence viral dynamics during early HIV-1 infection. The Journal of infectious diseases. 2007;195(9):1270-7. Epub 2007/03/15. doi: 10.1086/513568. PubMed PMID: 17396995.
  • Smith DM, Mathews WC. Physicians’ attitudes toward homosexuality and HIV: survey of a California Medical Society- revisited (PATHH-II). J Homosex. 2007;52(3-4):1-9. Epub 2007/06/28. doi: 10.1300/J082v52n03_01. PubMed PMID: 17594969.
  • Smith D, Moini N, Pesano R, Cachay E, Aiem H, Lie Y, Richman D, Little S. Clinical utility of HIV standard genotyping among antiretroviral-naive individuals with unknown duration of infection. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2007;44(3):456-8. Epub 2006/12/28. doi: 10.1086/510748. PubMed PMID: 17205459.
  • Smith DM, Wong JK, Shao H, Hightower GK, Mai SHT, Moreno JM, Ignacio CC, Frost SDW, Richman DD, Little SJ. Long-term persistence of transmitted HIV drug resistance in male genital tract secretions: implications for secondary transmission. The Journal of infectious diseases. 2007;196(3):356-60. Epub 2007/06/19. doi: 10.1086/519164. PubMed PMID: 17597449.
  • Butler DM, Smith DM. Serosorting can potentially increase HIV transmissions. AIDS (London, England). 2007;21(9):1218-20. doi: 10.1097/QAD.0b013e32814db7bf. PubMed PMID: 17502737.
  • Smith DM, Strain MC, Frost SDW, Pillai SK, Wong JK, Wrin T, Liu Y, Petropolous CJ, Daar ES, Little SJ, Richman DD. Lack of neutralizing antibody response to HIV-1 predisposes to superinfection. Virology. 2006;355(1):1-5. Epub 2006/09/07. doi: 10.1016/j.virol.2006.08.009. PubMed PMID: 16962152.
  • Mehta S, Herndier N, Smith D. Mycobacterium szulgai causing knee abscess and osteomyelitis in a patient with acquired immunodeficiency syndrome and subsequent immune reconstitution Syndrome. Infectious Diseases in Clinical Practice. 2006;14. doi: 10.1097/01.idc.0000214370.54423.2f.
  • Smith DM. The controversies of nevirapine for preventing mother-to-child HIV transmission. AIDS (London, England). 2006;20(2):281-3. doi: 10.1097/01.aids.0000198095.00820.82. PubMed PMID: 16511423.
  • Smith DM, Drumright LN, Frost SDW, Cheng WS, Espitia S, Daar ES, Little SJ, Gorbach PM. Characteristics of recently HIV-infected men who use the Internet to find male sex partners and sexual practices with those partners. Journal of acquired immune deficiency syndromes (1999). 2006;43(5):582-7. doi: 10.1097/01.qai.0000243100.49899.2a. PubMed PMID: 17019370.
  • Pillai SK, Pond SLK, Liu Y, Good BM, Strain MC, Ellis RJ, Letendre S, Smith DM, Günthard HF, Grant I, Marcotte TD, McCutchan JA, Richman DD, Wong JK. Genetic attributes of cerebrospinal fluid-derived HIV-1 env. Brain : a journal of neurology. 2006;129(Pt 7):1872-83. Epub 2006/05/30. doi: 10.1093/brain/awl136. PubMed PMID: 16735456.
  • Smith DM, Strain MC, Frost SDW, Pillai SK, Wong JK, Wrin T, Liu Y, Petropolous CJ, Daar ES, Little SJ, Richman DD. Lack of neutralizing antibody response to HIV-1 predisposes to superinfection. Virology. 2006;355(1):1-5. Epub 2006/09/07. doi: 10.1016/j.virol.2006.08.009. PubMed PMID: 16962152.
  • Goicoechea M, Smith DM, Liu L, May S, Tenorio AR, Ignacio CC, Landay A, Haubrich R. Determinants of CD4+ T cell recovery during suppressive antiretroviral therapy: association of immune activation, T cell maturation markers, and cellular HIV-1 DNA. The Journal of infectious diseases. 2006;194(1):29-37. Epub 2006/05/18. doi: 10.1086/504718. PubMed PMID: 16741879.
  • Little SJ, Smith DM. HIV treatment decisions and transmitted drug resistance. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2005;41(2):233-5. doi: 10.1086/431215. PubMed PMID: 15983921.
  • Smith D, Wong J, Mai H, Moreno J, Russell T, Ignacio C, Frost S, Richman D, Little S, editors. Slow reversion of HIV transmitted drug resistance to non-nucleoside reverse transcriptase inhibitors in semen. Antiviral Therapy; 2005: Int Medical Press LTD, London, England.
  • Pillai SK, Kosakovsky Pond SL, Woelk CH, Richman DD, Smith DM. Codon volatility does not reflect selective pressure on the HIV-1 genome. Virology. 2005;336(2):137-43. doi: 10.1016/j.virol.2005.03.014. PubMed PMID: 15892955.
  • Pillai SK, Good B, Pond SK, Wong JK, Strain MC, Richman DD, Smith DM. Semen-specific genetic characteristics of human immunodeficiency virus type 1 env. Journal of virology. 2005;79(3):1734-42. doi: 10.1128/JVI.79.3.1734-1742.2005. PubMed PMID: 15650198.
  • Yang OO, Daar ES, Jamieson BD, Balamurugan A, Smith DM, Pitt JA, Petropoulos CJ, Richman DD, Little SJ, Brown AJL. Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains. Journal of virology. 2005;79(2):860- 8. doi: 10.1128/JVI.79.2.860-868.2005. PubMed PMID: 15613314.
  • Smith DM, Wong JK, Hightower GK, Ignacio CC, Koelsch KK, Petropoulos CJ, Richman DD, Little SJ. HIV drug resistance acquired through superinfection. AIDS (London, England). 2005;19(12):1251-6. doi: 10.1097/01.aids.0000180095.12276.ac. PubMed PMID: 16052079.
  • Strain MC, Letendre S, Pillai SK, Russell T, Ignacio CC, Günthard HF, Good B, Smith DM, Wolinsky SM, Furtado M, Marquie-Beck J, Durelle J, Grant I, Richman DD, Marcotte T, McCutchan JA, Ellis RJ, Wong JK. Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy. Journal of virology. 2005;79(3):1772-88. doi: 10.1128/JVI.79.3.1772-1788.2005. PubMed PMID: 15650202.
  • Smith DM, Richman DD, Little SJ. HIV superinfection. The Journal of infectious diseases. 2005;192(3):438-44. Epub 2005/06/30. doi: 10.1086/431682. PubMed PMID: 15995957.
  • Frost SDW, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, Paxinos E, Chappey C, Galovich J, Beauchaine J, Petropoulos CJ, Little SJ, Richman DD. Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection. Proceedings of the National Academy of Sciences of the United States of America. 2005;102(51):18514-9. Epub 2005/12/09. doi: 10.1073/pnas.0504658102. PubMed PMID: 16339909.
  • Wong JK, Smith D, Richman D. Chapter 34 – HIV Drug Susceptibility Testing. In: Wormser GP, editor. AIDS and Other Manifestations of HIV Infection (Fourth Edition). San Diego: Academic Press; 2004. p. 883-904.
  • Richman DD, Little SJ, Smith DM, Wrin T, Petropoulos C, Wong JK. HIV evolution and escape. Trans Am Clin Climatol Assoc. 2004;115:289-303. PMID: 17060974. PubMed PMID: 17060974.
  • Smith DM, Kingery JD, Wong JK, Ignacio CC, Richman DD, Little SJ. The prostate as a reservoir for HIV-1. AIDS (London, England). 2004;18(11):1600-2. doi: 10.1097/01.aids.0000131364.60081.01. PubMed PMID: 15238781.
  • Smith DM, Wong JK, Hightower GK, Ignacio CC, Koelsch KK, Daar ES, Richman DD, Little SJ. Incidence of HIV superinfection following primary infection. JAMA. 2004;292(10):1177-8. doi: 10.1001/jama.292.10.1177. PubMed PMID: 15353529.
  • Koelsch KK, Smith DM, Little SJ, Ignacio CC, Macaranas TR, Brown AJ, Petropoulos CJ, Richman DD, Wong JK. Clade B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virus. AIDS (London, England). 2003;17(7):F11-F6. doi: 10.1097/00002030-200305020-00001. PubMed PMID: 12700477.
  • Smith D, Koelsch K, Wong J, Hightower G, Ignacio C, Richman D, Little S, editors. Male genital tract compartmentalization and transmission of 215L revertant. Antiviral Therapy; 2003: Int Medical Press Ltd 2-4 Idol Lane, London EC3R 5DD, England.
  • Mackowiak PA, Chardos JF, Smith D. Demyelinating Encephalitis. Clinical infectious diseases. 2003;36(10):1332-4. doi: 10.1086/374893.
  • Strain MC, Günthard HF, Havlir DV, Ignacio CC, Smith DM, Leigh-Brown AJ, Macaranas TR, Lam RY, Daly OA, Fischer M, Opravil M, Levine H, Bacheler L, Spina CA, Richman DD, Wong JK. Heterogeneous clearance rates of long-lived lymphocytes infected with HIV: intrinsic stability predicts lifelong persistence. Proceedings of the National Academy of Sciences of the United States of America. 2003;100(8):4819-24. Epub 2003/04/08. doi: 10.1073/pnas.0736332100. PubMed PMID: 12684537.
  • Smith D, Bannykh S, Ziegler E. A woman kicked in the head by a horse. Infectious Diseases in Clinical Practice. 2002;11(1):28-9.
  • Smith D, Wong J. Continue antiretroviral therapy during virologic failure? Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2002;34(4):553-6. doi: 10.1086/338017. PubMed PMID: 11797186.
  • Rought S, Sasik R, Smith D, Corbeil J. Chipping Away at HIV Pathogenesis. In: Shaw Kj, editor. Pathogen Genomics. Totowa, New Jersey: Humana Press Inc; 2002. p. 13-24.
  • Smith D, Metzgar D, Wills C, Fierer J. Fatal Saccharomyces cerevisiae aortic graft infection. J Clin Microbiol. 2002;40(7):2691-2. doi: 10.1128/jcm.40.7.2691-2692.2002. PubMed PMID: 12089311.
  • Smith D, Letendre S. Viral pneumonia as a serious complication of etanercept therapy. Ann Intern Med. 2002;136(2):174-. doi: 10.7326/0003-4819-136-2-200201150-00020. PubMed PMID: 11790076.
  • Smith DM, Rickman LS. Echinococcosis: A Drop of Water—Review on Human Disease, Diagnosis, and Management. Infectious Diseases in Clinical Practice. 2001;10(7):355-9. DOI: 10.1097/00019048-200109000-00003.
  • Smith DM, Ziegler EJ, Rickman LS. Primary Meningococcal Polyarthritis, Cellulitis, and Pneumonia in an Elderly, Immunocompetent Woman. Infectious Diseases in Clinical Practice. 1999;8(4):215-8.