Publications 2020 – 2016

Perry KE, Taylor J, Patel H, Javadi SS, Mathur K, Kaytes A, Concha-Garcia S, Little S, Smith D, Gianella S, Dubé K. “[It] is now my responsibility to fulfill that wish:” Clinical and rapid autopsy staff members’ experiences and perceptions of HIV reservoir research at the end of life. PLoS One. 2020;15(11):e0242420. Epub 2020/11/19. doi: 10.1371/journal.pone.0242420. PubMed PMID: 33206710.
Jean Louis F, Domercant JW, Ignacio C, Gianella S, Galbaud G, Leonard M, Smith DM, Chaillon A. High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. J Acquir Immune Defic Syndr. 2020;85(4):416-22. Epub 2020/11/03. doi: 10.1097/qai.0000000000002475. PubMed PMID: 33136738.
Saag MS, Gandhi RT, Hoy JF, Landovitz RJ, Thompson MA, Sax PE, Smith DM, Benson CA, Buchbinder SP, Del Rio C, Eron JJ, Jr., Fätkenheuer G, Günthard HF, Molina JM, Jacobsen DM, Volberding PA. Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel. Jama. 2020;324(16):1651-69. Epub 2020/10/15. doi: 10.1001/jama.2020.17025. PubMed PMID: 33052386.
Rydyznski Moderbacher C, Ramirez SI, Dan JM, Grifoni A, Hastie KM, Weiskopf D, Belanger S, Abbott RK, Kim C, Choi J, Kato Y, Crotty EG, Kim C, Rawlings SA, Mateus J, Tse LPV, Frazier A, Baric R, Peters B, Greenbaum J, Ollmann Saphire E, Smith DM, Sette A, Crotty S. Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity. Cell. 2020;183(4):996-1012.e19. Epub 2020/10/05. doi: 10.1016/j.cell.2020.09.038. PubMed PMID: 33010815.
Ayers JW, Althouse BM, Poliak A, Leas EC, Nobles AL, Dredze M, Smith D. Quantifying Public Interest in Police Reforms by Mining Internet Search Data Following George Floyd’s Death. J Med Internet Res. 2020;22(10):e22574. Epub 2020/10/22. doi: 10.2196/22574. PubMed PMID: 33084578.
Vrancken B, Mehta SR, Ávila-Ríos S, García-Morales C, Tapia-Trejo D, Reyes-Terán G, Navarro-Álvarez S, Little SJ, Hoenigl M, Pines HA, Patterson T, Strathdee SA, Smith DM, Dellicour S, Chaillon A. Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border. Clin Infect Dis. 2020. Epub 2020/10/21. doi: 10.1093/cid/ciaa1588. PubMed PMID: 33079188.
Strathdee SA, Martin NK, Pitpitan EV, Stockman JK, Smith DM. What the HIV Pandemic Experience Can Teach the United States About the COVID-19 Response. J Acquir Immune Defic Syndr. 2021;86(1):1-10. Epub 2020/10/08. doi: 10.1097/qai.0000000000002520. PubMed PMID: 33027152.
Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, Tindle C, Fuller M, Taheri S, Rogers TF, Beutler N, Ramirez SI, Rawlings SA, Pretorius V, Smith DM, Burton DR, Crotty Alexander LE, Duran J, Crotty S, Dan JM, Das S, Ghosh P. AI-guided discovery of the invariant host response to viral pandemics. bioRxiv. 2020. Epub 2020/10/01. doi: 10.1101/2020.09.21.305698. PubMed PMID: 32995790.
Wang S, Li W, Hui H, Tiwari SK, Zhang Q, Croker BA, Rawlings S, Smith D, Carlin AF, Rana TM. Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and coronaviruses by depleting membrane cholesterol. EMBO J. 2020:e2020106057. Epub 2020/09/19. doi:10.15252/embj.2020106057. PubMed PMID: 32944968.
Rawlings SA, Ignacio C, Porrachia M, Du P, Smith DM, Chaillon A. No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. Open Forum Infect Dis. 2020;7(8):ofaa325. Published 2020 Aug 7. doi:10.1093/ofid/ofaa325
Rogers T, Zhao F, Huang D, Beutler N, Burns A, He W, Limbo O, Smith C, Song G, Woehl J, Yang L, Abbott R, Callaghan S, Garcia E, Hurtado J, Parren M, Peng L, Ramirez S, Ricketts J, Ricciardi M, Rawlings S, Wu N, Yuan M, Smith D, Nemazee D, Teijaro J, Voss J, Wilson I, Andrabi R, Briney B, Landais E, Sok D, Jardine J, Burton D. Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model. 2020. Science Mag. doi: 10.1126/science.abc7520.
Burbelo P, Riedo F, Morishima C, Rawlings S, Smith D, Das S, Strich J, Chertow D, Davey Jr R, Cohen J. Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease. 2019. The Journal of Infectious Diseases. doi: 10.1093/infdis/jiaa273.
Grifoni A, Weiskopf D, Ramirez S, Mateus J, Dan J, Moderbacher C, Rawlings S, Sutherland A, Premkumar L, Jadi R, Marrama D, de Silva A, Frazier A, Carlin A, Greenbaum J, Peters B, Krammer F, Smith D, Crotty S, Sette A. Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. Cell. 2020. doi: 10.1016/j.cell.2020.05.015.
Zai J, Liu H, Lu Z, Chaillon A, Smith D, Li Y, Li X. Tracing the transmission dynamics of HIV-1 CRF55_01B. Sci Rep. 2020;10(1):5098. Epub 2020/03/22. doi: 10.1038/s41598-020-61870-x. PubMed PMID: 32198405; PMCID: PMC7083841.
Martin TCS, Chaillon A, Graves SK, Lin T, Gianella S, Smith DM, Little SJ, Hoenigl M. Genetic Network Analysis to Assess the Risk of Human Immunodeficiency Virus Transmission Among Men Who Have Sex With Men Seeking Partners on the Internet. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2020;70(5):925-32. Epub 2019/04/07. doi: 10.1093/cid/ciz278. PubMed PMID: 30953067.

2019

Boobalan J, Dinesha TR, Gomathi S, Elakkiya E, Pradeep A, Chitra D, Murugavel KG, Balakrishnan P, Shantha S, Solomon SS, Kumarasamy N, Smith DM, Saravanan S. Pooled nucleic acid testing strategy for monitoring HIV-1 treatment in resource limited settings. J Clin Virol. 2019;117:56-60. Epub 2019/06/19. doi: 10.1016/j.jcv.2019.05.012. PubMed PMID: 31212189.
Wooten D, Smith D. Response to: Is Burnout Infectious? Understanding Drivers of Burnout and Job Satisfaction Among Academic Infectious Diseases Physicians. Open Forum Infect Dis. 2019;6(10):ofz378. Epub 2019/10/30. doi: 10.1093/ofid/ofz378. PubMed PMID: 31660342; PubMed Central PMCID: PMCPMC6786503.
Hoenigl M, Little SJ, Stockman JK, Skaathun B, Grelotti D, Weibel N, Smith DM. 1961. GrindrTM on Screen Activity on iPhones Correlates with HIV Risk and Substance Use in Men Who Have Sex with Men, San Diego. Open Forum Infectious Diseases. 2019;6(Supplement_2):S63-S4. doi: 10.1093/ofid/ofz359.138.
Gianella S, Moser C, Vitomirov A, McKhann A, Layman L, Scott B, Caballero G, Lada S, Bosch RJ, Hoenigl M, Lurain N, Landay A, Lederman MM, Hunt PW, Smith D. Presence of asymptomatic CMV and EBV DNA in blood of persons with HIV starting antiretroviral therapy are associated with non-AIDS clinical events. AIDS (London, England). 2020:10.1097/QAD.0000000000002484. Epub 2020/02/01. doi: 10.1097/QAD.0000000000002484. PubMed PMID: 32004204.
Hoenigl M, Little SJ, Grelotti D, Skaathun B, Wagner GA, Weibel N, Stockman JK, Smith DM. GrindrTM Users Take more Risks, but are more Open to HIV Pre-Exposure Prophylaxis: Could this Dating App Provide Platform for HIV Prevention Outreach? Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2019:ciz1093. Epub 2019/11/05. doi: 10.1093/cid/ciz1093. PubMed PMID: 31677383.
Chaillon A, Gianella S, Dellicour S, Rawlings SA, Schlub TE, Faria De Oliveira M, Ignacio C, Porrachia M, Vrancken B, Smith DM. HIV persists throughout deep tissues with repopulation from multiple anatomical sources. J Clin Invest. 2020:134815. Epub 2020/01/08. doi: 10.1172/JCI134815. PubMed PMID: 31910162.
Chaillon A, Hoenigl M, Freitas L, Feldman H, Tilghman W, Wang L, Smith D, Little S, Mehta SR. Optimizing Screening for HIV. Open Forum Infectious Diseases. 2020;7(2). doi: 10.1093/ofid/ofaa024.
Leas EC, Nobles AL, Caputi TL, Dredze M, Smith DM, Ayers JW. Trends in Internet Searches for Cannabidiol (CBD) in the United States. JAMA Netw Open. 2019;2(10):e1913853. Epub 2019/10/24. doi: 10.1001/jamanetworkopen.2019.13853. PubMed PMID: 31642924; PubMed Central PMCID: PMC6820034.
Chaillon A, Mehta SR, Hoenigl M, Solomon SS, Vickerman P, Hickman M, Skaathun B, Martin NK. Cost-effectiveness and budgetary impact of HCV treatment with direct-acting antivirals in India including the risk of reinfection. PLoS One. 2019;14(6):e0217964. Epub 2019/06/07. doi: 10.1371/journal.pone.0217964. PubMed PMID: 31170246; PubMed Central PMCID: PMC6553784.
Nobles AL, Leas EC, Althouse BM, Dredze M, Longhurst CA, Smith DM, Ayers JW. Requests for Diagnoses of Sexually Transmitted Diseases on a Social Media Platform. JAMA. 2019;322(17):1712-3. Epub 2019/11/07. doi: 10.1001/jama.2019.14390. PubMed PMID: 31688875; PubMed Central PMCID: PMC6865226.
Hani L, Chaillon A, Nere ML, Ruffin N, Alameddine J, Salmona M, Lopez Zaragoza JL, Smith DM, Schwartz O, Lelievre JD, Delaugerre C, Levy Y, Seddiki N. Proliferative memory SAMHD1low CD4+ T cells harbour high levels of HIV-1 with compartmentalized viral populations. PLoS pathogens. 2019;15(6):e1007868. Epub 2019/06/21. doi: 10.1371/journal.ppat.1007868. PubMed PMID: 31220191; PubMed Central PMCID: PMC6605680.
Chaillon A, Delaugerre C, Brenner B, Armero A, Capitant C, Nere ML, Leturque N, Pialoux G, Cua E, Tremblay C, Smith DM, Goujard C, Meyer L, Molina JM, Chaix ML. In-depth Sampling of High- risk Populations to Characterize HIV Transmission Epidemics Among Young MSM Using PrEP in France and Quebec. Open forum infectious diseases. 2019;6(3):ofz080. Epub 2019/03/23. doi: 10.1093/ofid/ofz080. PubMed PMID: 30899768; PubMed Central PMCID: PMC6422434.
LaMere SA, Chaillon A, Huynh C, Smith DM, Gianella S. Challenges in Quantifying Cytosine Methylation in the HIV Provirus. mBio. 2019;10(1). Epub 2019/01/24. doi: 10.1128/mBio.02268- 18. PubMed PMID: 30670613; PubMed Central PMCID: PMC6343035.
Smith D, Huynh C, Moore AJ, Frick A, Anderson C, Porrachia M, Scott B, Stous S, Schooley R, Little S, Santos AT. Herd Immunity Likely Protected the Men Who Have Sex With Men in the Recent Hepatitis A Outbreak in San Diego, California. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2019;68(7):1228-30. Epub 2018/07/28. doi: 10.1093/cid/ciy592. PubMed PMID: 30052941.
Chaillon A, Sun X, Cachay ER, Looney D, Wyles D, Garfein RS, Martin TCS, Jain S, Mehta SR, Smith DM, Little SJ, Martin NK. Primary Incidence of Hepatitis C Virus Infection Among HIV- Infected Men Who Have Sex With Men in San Diego, 2000-2015. Open forum infectious diseases. 2019;6(4):ofz160. Epub 2019/05/02. doi: 10.1093/ofid/ofz160. PubMed PMID: 31041355; PubMed Central PMCID: PMC6483132.
Beck S, Zhu Z, Oliveira MF, Smith DM, Rich JN, Bernatchez JA, Siqueira-Neto JL. Mechanism of Action of Methotrexate Against Zika Virus. Viruses. 2019;11(4). Epub 2019/04/13. doi: 10.3390/v11040338. PubMed PMID: 30974762; PubMed Central PMCID: PMC6521145.
Pines HA, Patrick R, Smith DM, Harvey-Vera A, Blumenthal JS, Rangel G, Semple SJ, Patterson TL. HIV Prevention Method Preferences Within Sexual Partnerships Reported by HIV-Negative MSM and TW in Tijuana, Mexico. AIDS and behavior. 2019. Epub 2019/04/05. doi: 10.1007/s10461-019-02492-x. PubMed PMID: 30945030.
de Almeida SM, Oliveira MF, Chaillon A, Rotta I, Ribeiro CE, de Pereira AP, Smith D, Letendre S, Ellis RJ. Transient and asymptomatic meningitis in human immunodeficiency virus-1 subtype C: a case study of genetic compartmentalization and biomarker dynamics. Journal of neurovirology. 2018;24(6):786-96. Epub 2018/09/09. doi: 10.1007/s13365-018-0672-y. PubMed PMID: 30194587; PubMed Central PMCID: PMC6279585.
Saag MS, Gunthard HF, Smith DM. Baseline Genotype Testing to Assess Drug Resistance Before Beginning HIV Treatment-Reply. Jama. 2018;320(20):2154. Epub 2018/11/28. doi: 10.1001/jama.2018.15946. PubMed PMID: 30480722; PubMed Central PMCID: PMC6415747.
Wertheim JO, Murrell B, Mehta SR, Forgione LA, Kosakovsky Pond SL, Smith DM, Torian LV. Growth of HIV-1 Molecular Transmission Clusters in New York City. The Journal of infectious diseases. 2018;218(12):1943-53. Epub 2018/07/17. doi: 10.1093/infdis/jiy431. PubMed PMID: 30010850; PMCID: PMC6217720.
Saag MS, Benson CA, Gandhi RT, Hoy JF, Landovitz RJ, Mugavero MJ, Sax PE, Smith DM, Thompson MA, Buchbinder SP, Del Rio C, Eron JJ, Jr., Fatkenheuer G, Gunthard HF, Molina JM, Jacobsen DM, Volberding PA. Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel. JAMA. 2018;320(4):379-96. Epub 2018/07/26. doi: 10.1001/jama.2018.8431. PubMed PMID: 30043070.
Prakash K, Gianella S, Dubé K, Taylor J, Lee G, Smith DM. Willingness to participate in HIV research at the end of life (EOL). PLoS One. 2018 Jul 23; 13(7):e0199670. doi: 10.1371/journal.pone.0199670. PMID: 30036365. PMC6056048.
Christensen-Quick A, Chaillon A, Yek C, Zanini F, Jordan P, Ignacio C, Caballero G, Gianella S, Smith D. Influenza Vaccination Can Broadly Activate the HIV Reservoir During Antiretroviral Therapy. J Acquir Immune Defic Syndr. 2018 Nov 1; 79(3):e104-e107. doi: 10.1097/QAI.0000000000001829. PMID: 30085954. PMC6185804.
Namazi G, Fajnzylber JM, Aga E, Bosch RJ, Acosta EP, Sharaf R, Hartogensis W, Jacobson JM, Connick E, Volberding P, Skiest D, Margolis D, Sneller MC, Little SJ, Gianella S, Smith DM, Kuritzkes DR, Gulick RM, Mellors JW, Mehraj V, Gandhi RT, Mitsuyasu R, Schooley RT, Henry K, Tebas P, Deeks SG, Chun TW, Collier AC, Routy JP, Hecht FM, Walker BD, Li JZ. The Control of HIV After Antiretroviral Medication Pause (CHAMP) Study: Posttreatment Controllers Identified From 14 Clinical Studies. J Infect Dis. 2018 Nov 5; 218(12):1954-1963. doi: 10.1093/infdis/jiy479. PMID: 30085241. PMC6217727.
Dubé K, Gianella S, Concha-Garcia S, Little SJ, Kaytes A, Taylor J, Mathur K, Javadi S, Nathan A, Patel H, Luter S, Philpott-Jones S, Brown B, Smith D. Ethical considerations for HIV cure- related research at the end of life. BMC Med Ethics. 2018 Oct 20; 19(1):83. doi: 10.1186/s12910- 018-0321-2. PMID: 30342507; PMC6196016.
Carlin AF, Wen J, Vizcarra EA, McCauley M, Chaillon A, Akrami K, Kim C, Ngono AE, Lara- Marquez ML, Smith DM, Glass CK, Schooley RT, Benner C, Shresta S. A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela. PLoS Negl Trop Dis. 2018 Dec 31; 12(12):e0007053. doi: 10.1371/journal.pntd.0007053. PMID: 30596671; PMC6329527.
Avila-Rios S, Garcia-Morales C, Valenzuela-Lara M, Chaillon A, Tapia-Trejo D, Perez-Garcia M, Lopez-Sanchez DM, Maza-Sanchez L, Del Arenal-Sanchez SJ, Paz-Juarez HE, Quiroz-Morales VS, Mehta SR, Smith DM, Leon-Juarez EA, Magis-Rodriguez C, Reyes-Teran G. HIV-1 drug resistance before initiation or re-initiation of first-line ART in eight regions of Mexico: a sub- nationally representative survey. The Journal of antimicrobial chemotherapy. 2019;74(4):1044-55. Epub 2019/01/01. doi: 10.1093/jac/dky512. PubMed PMID: 30597094.

2018

Lofano G, Gorman MJ, Yousif AS, Yu WH, Fox JM, Dugast AS, Ackerman ME, Suscovich TJ, Weiner J, Barouch D, Streeck H, Little S, Smith D, Richman D, Lauffenburger D, Walker BD, Diand MS, Alter G. Antigen-specific antibody Fc glycosylation enhances humoral immunity via the recruitment of complement. Science immunology. 2018;3(26). Epub 2018/08/19. doi: 10.1126/sciimmunol.aat7796. PubMed PMID: 30120121; PubMed Central PMCID: PMC6298214.
Sadanand S, Das J, Chung AW, Schoen MK, Lane S, Suscovich TJ, Streeck H, Smith DM, Little SJ, Lauffenburger DA, Richman DD, Alter G. Temporal variation in HIV-specific IgG subclass antibodies during acute infection differentiates spontaneous controllers from chronic progressors. AIDS. 2018 Feb 20;32(4):443-450. doi: 10.1097/QAD.0000000000001716. PMID: 29239894, PMC5983383.
Mehta SR, Chaillon A, Gaines TL, Gonzalez-Zuniga PE, Stockman JK, Almanza-Reyes H, Chavez JR, Vera A, Wagner KD, Patterson TL, Scott B, Smith DM, Strathdee SA. Impact of Public Safety Policies on Human Immunodeficiency Virus Transmission Dynamics in Tijuana, Mexico. Clin Infect Dis. 2018 Feb 10;66(5):758-764. doi: 10.1093/cid/cix884. PMID: 29045592, PMC5848227.
Gianella S, Sonya Haw J, Blumenthal J, Sullivan B, Smith D. The Importance of Human Immunodeficiency Virus Research for Transgender and Gender-Nonbinary Individuals. Clin Infect Dis. 2018 Apr 17;66(9):1460-1466. doi: 10.1093/cid/cix990. PMID: 29126186, PMC5905620.
Xu M, Moresco JJ, Chang M, Mukim A, Smith D, Diedrich JK, Yates JR 3rd, Jones KA. SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy. PLoS Pathog. 2018 May 23;14(5):e1007071. doi: 10.1371/journal.ppat.1007071. PMID: 29791506.
Dinesha TR, Boobalan J, Sivamalar S, Solomon SS, Poongulali S, Pradeep A, Murugavel KG, Balakrishnan P, Smith DM, Saravanan S. HIV, Hepatitis B Virus, and Hepatitis C Virus Prevalence Among High-Risk Populations in South India. AIDS Res Hum Retroviruses. 2018 Apr; 34(4):327-328. doi: 10.1089/AID.2017.0253. PMID: 29161880, PMC5899286.
Dinesha TR, Boobalan J, Sivamalar S, Subashini D, Solomon SS, Murugavel KG, Balakrishnan P, Smith DM, Saravanan S. Occult HBV infection in HIV-infected adults and evaluation of pooled NAT for HBV. J Viral Hepat. 2018 Jun; 25(6):718-723. doi: 10.1111/jvh.12858. PMID: 29316078, PMC5980682

2017

Salas-Espinoza KJ, Menchaca-Diaz R, Patterson TL, Urada LA, Smith D, Strathdee SA, Pitpitan EV. HIV Prevalence and Risk Behaviors in Male to Female (MTF) Transgender Persons in Tijuana, Mexico. AIDS Behav. 2017 Dec; 21(12):3271-3278. doi: 10.1007/s10461-017-1931-2. PMID: 29032411 PMCID: PMC5736304.
Caputi TL, Smith D, Ayers JW. Suicide Risk Behaviors Among Sexual Minority Adolescents in the United States, 2015. JAMA. 2017 Dec 19;318(23):2349-2351. doi: 10.1001/jama.2017.16908. PMID: 29260214.
Chaillon A, Gianella S, Lada SM, Perez-Santiago J, Jordan P, Ignacio C, Karris M, Richman DD, Mehta SR, Little SJ, Wertheim JO, Smith DM. Size, Composition and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. J Virol. 2018 Jan 17; 92(3). pii: e01589-17. doi: 10.1128/JVI.01589-17. PMID: 29142136 PMC5774877
Chaillon A, Sun X, Cachay ER, Looney D, Wyles DL, Garfein RL, Anderson CM, Martin TC, Jain S, Mehta SR, Smith DM, Little SJ, Martin NK. Increasing Primary Incidence of Hepatitis C Among HIV-Infected Men Who Have Sex with Men in San Diego; a Pooled Analysis of Two Large Clinics from 2000-2015. Hepatology, 66:72A-73A, 2017.
Schooley RT, Biswas B, Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T. Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection. Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e00954-17. doi: 10.1128/AAC.00954-17. PMID: 28807909 PMCID: PMC5610518. Errratum in Antimicrobial agents and chemotherapy. 2018;62(12). Epub 2018/11/28. doi: 10.1128/aac.02221- 18. PubMed PMID: 30478181; PubMed Central PMCID: PMC6256779.
Oom AL, Smith D, Akrami K. Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests. Sci Rep. 2017 Jul 24; 7(1):6218. doi: 10.1038/s41598-017-05980-z. PMID: 28740150; PMC5524841.
Chaillon A, Nakazawa M, Wertheim JO, Little SJ, Smith DM, Mehta SR, Gianella S. No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. J Virol. 2017 Aug 9. pii: JVI.00769-17. doi: 10.1128/JVI.00769-17. PMID: 28794047. PMC5640831
Pérez-Santiago J, Ramirez-Gaona M, Holm-Kennedy R, Smith DM, Fierer J. Bacteremia and Skin Infections in Four Patients Caused by Helicobacter-Like Organisms. Open Forum Infect Dis. 2017;4(3):ofx074. Published 2017 Aug 3. doi:10.1093/ofid/ofx074. PMID: 31338379; PMCID: PMC6636245.
Pérez-Santiago J, Ramirez-Gaona M, Holm-Kennedy R, Smith DM, Fierer J. Bacteremia and Skin Infections in Four Patients Caused by Helicobacter-Like Organisms. Open Forum Infectious Diseases, Volume 4, Issue 3, 1 July 2017, ofx074, doi: 10.1093/ofid/ofx074.
de Almeida SM, Rotta I, Ribeiro CE, Oliveira MF, Chaillon A, de Pereira AP, Cunha AP, Zonta M, Bents JF, Raboni SM, Smith D, Letendre S, Ellis RJ. Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study. J Neurovirol. 2017 Jun; 23(3):460-473. doi: 10.1007/s13365-017-0518-z. PMID: 28247269; PMC5441962.
Landais E, Murrell B, Briney B, Murrell S, Rantalainen K, Berndsen ZT, Ramos A, Wickramasinghe L, Smith ML, Eren K, de Val N, Wu M, Cappelletti A, Umotoy J, Lie Y, Wrin T, Algate P, Chan-Hui PY, Karita E; IAVI Protocol C Investigators; IAVI African HIV Research Network, Ward AB, Wilson IA, Burton DR, Smith D, Pond SLK, Poignard P. HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. Immunity. 2017 Nov 21;47(5):990-1003.e9. doi: 10.1016/j.immuni.2017.11.002. PMID: 29166592; PMCID: PMC5736302.
Wertheim JO, Kosakovsky Pond SL, Forgione LA, Mehta SR, Murrell B, Shah S, Smith DM, Scheffler K, Torian LV. Social and Genetic Networks of HIV-1 Transmission in New York City. PLoS Pathog. 2017; 13(1):e1006000. doi: 10.1371/journal.ppat.1006000. PubMed PMID: 28068413; PMC5221827
Ahn MY, Wertheim JO, Kim WJ, Kim SW, Lee JS, Ann HW, Jeon Y, Ahn JY, Song JE, Oh DH, Kim YC, Kim EJ, Jung IY, Kim MH, Jeong W, Jeong SJ, Ku NS, Kim JM, Smith DM, Choi JY. Short Communication: HIV-1 Transmission Networks Across South Korea. AIDS Res Hum Retroviruses. 2017 Aug; 33(8):827-831. doi: 10.1089/aid.2016.0212. PMID: 28346838; PMC5564048.
Choi JY, Pond SLK, Anderson CM, Richman DD, Smith DM. Molecular Features of the V1-V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1. J Infect Dis. 2017; 215(10):1506-13. doi: 10.1093/infdis/jix184. PMID: 28419276. PMCID in process.
Wagner GA, Landais E, Caballero G, Phung P, Kosakovsky Pond SL, Poignard P, Richman DD, Little SJ, Smith DM. Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response. J Virol. 2017 Aug 10; 91(17). pii: e00475-17. doi: 10.1128/JVI.00475-17. PMID: 28615205; PMC5553187.
Chaillon A, Smith DM, Vanpouille C, Lisco A, Jordan P, Caballero G, Vargas M, Gianella S, Mehta SR. HIV Trafficking Between Blood and Semen During Early Untreated HIV Infection. J Acquir Immune Defic Syndr. 2017; 74(1):95-102. doi: 10.1097/QAI.0000000000001156. PMID: 27548440; PMC5140710.
Gianella S, Taylor J, Brown TR, Kaytes A, Achim CL, Moore DJ, Little SJ, Ellis RJ, Smith DM. Can research at the end of life be a useful tool to advance HIV cure? AIDS. 2017; 31(1):1-4. doi: 10.1097/QAD.0000000000001300. PMID: 27755112; PMCID: PMC5137789.
Green N, Hoenigl M, Chaillon A, Anderson CM, Kosakovsky Pond SL, Smith DM, Little SJ. Partner services in adults with acute and early HIV infection. AIDS. 2017; 31(2):287-93. doi: 10.1097/QAD.0000000000001308. PMID: 27831950; PMCID: PMC5177524.
Chaillon A, Essat A, Frange P, Smith DM, Delaugerre C, Barin F, Ghosn J, Pialoux G, Robineau O, Rouzioux C, Goujard C, Meyer L, Chaix ML, on behalf the APCS. Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. Retrovirology. 2017; 14(1):15. doi: 10.1186/s12977-017-0339-4. PubMed PMID: 28222757; PMCID: PMC5322782.
Vesa J, Chaillon A, Wagner GA, Anderson CM, Richman DD, Smith DM, Little SJ. Increased HIV- 1 superinfection risk in carriers of specific human leukocyte antigen alleles. AIDS. 2017 May 15; 31(8):1149-1158. doi: 10.1097/QAD.0000000000001445. PMID: 28244954; PMCID: PMC5559224.
Glinka ER, Smith DM, Johns ST. Now is the Time to Study the Timing of Influenza Vaccine. HIV Med, HIV Med. 2018 Mar; 19(3):e53. doi: 10.1111/hiv.12486. PMID: 28116796. (PMCID not applicable)
Oliveira MF, Chaillon A, Nakazawa M, Vargas M, Letendre SL, Strain MC, Ellis RJ, Morris S, Little SJ, Smith DM, Gianella S. Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations. PLoS Pathog. 2017 Jan 3; 13(1):e1006112. doi: 10.1371/journal.ppat.1006112. eCollection 2017 Jan. PMID: 28046096; PMCID: PMC5266327.
Morris SR, Zhao M, Smith DM, Vargas MV, Little SJ, Gianella S. Longitudinal Viral Dynamics in Semen During Early HIV Infection. Clin Infect Dis. 2017 Feb 15; 64(4):428-434. doi: 10.1093/cid/ciw784. PMID: 28174909; PMCID: PMC5849030.
Chen X, Ye M, Pang W, Smith DM, Zhang C, Zheng YT. First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China. AIDS Res Hum Retroviruses. 2017 Jan; 33(1):74-76. doi: 10.1089/AID.2016.0169. PMID: 27392826. (PMCID not applicable)
Hu Y, Wan Z, Zhou YH, Smith D, Zheng YT, Zhang C. Identification of Two New HIV-1 Circulating Recombinant Forms (CRF87_cpx and CRF88_BC) from Reported Unique Recombinant Forms in Asia. AIDS Res Hum Retroviruses. 2017 Apr; 33(4):353-358. doi: 10.1089/AID.2016.0252. PMID: 27762598; PMCID: PMC5372766.
Chen X, Ye M, Duo L, Pang W, Smith D, Zhang C, Zheng YT. First description of two new HIV-1 recombinant forms CRF82_cpx and CRF83_cpx among drug users in Northern Myanmar. Virulence. 2017 Jul 4; 8(5):497-503. doi: 10.1080/21505594.2016.1226722. PMID: 27574950; PMCID: PMC5538334.
Saravanan S, Kausalya B, Gomathi S, Sivamalar S, Pachamuthu B, Selvamuthu P, Pradeep A, Sunil S, Mothi SN, Smith DM, Kantor R. Etravirine and Rilpivirine Drug Resistance Among HIV-1 Subtype C Infected Children Failing Non-Nucleoside Reverse Transcriptase Inhibitor-Based Regimens in South India. AIDS Res Hum Retroviruses. 2017 Jun; 33(6):567-574. doi: 10.1089/AID.2016.0133. PubMed PMID: 27869478. PubMed Central PMCID: PMC5695734.
Carter C, Akrami K, Hall D, Smith D, Aronoff-Spencer E. Lyophilized visually readable loop- mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNA. J Virol Methods. 2017 Jun;244:32-38. DOI: 10.1016/j.jviromet.2017.02.013. PMID: 28242293, PMCID: PMC5568651.

2016

Landais E, Murrell B, Briney B, de Val N, Murrell S, Laird M, Ramos A, Wickramasinghe L, Wrin T, Paul Algate P, Chan-Hui P-Y, Smith D, Wilson I, Ward A, Burton D, Kosakovsky-Pond S, Poignard P. Common Env Escape Drives the Maturation of V2-apex Targeting bnAbs in HIV-1 Infected Individuals. AIDS Res Human Retroviruses, 32:120-120, 2016.
Chaillon A, Martin NK, Martin TC, Wyles DL, Smith DM, Mehta SR, Ballard C, Colwell B, Torriani F, Hill L, Mathews C, Hicks C, Cachay ER. Elevated HCV reinfection incidence after successful treatment among HIV-infected men who have sex with men in San Diego. Hepatology, 64: 367A- 367A, 2016.
Zhao J, Chen L, Chaillon A, Zheng C, Cai W, Yang Z, Li G, Gan Y, Wang X, Hu Y, Zhong P, Zhang C, Smith DM. The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China. Sci Rep. 2016 Jun 29; 6:28703. doi: 10.1038/srep28703. PMID: 27352965; PMCID: PMC4926087.
Pérez-Santiago J, Schrier RD, de Oliveira MF, Gianella S, Var SR, Day TR, Ramirez-Gaona M, Suben JD, Murrell B, Massanella M, Cherner M, Smith DM, Ellis RJ, Letendre SL, Mehta SR. Cell-free mitochondrial DNA in CSF is associated with early viral rebound, inflammation, and severity of neurocognitive deficits in HIV infection. J Neurovirol. 2016 Apr; 22(2):191-200. doi: 10.1007/s13365-015-0384-5. Epub 2015 Oct 1. PMID: 26428514; PMCID: PMC4862614.
Gianella S, Anderson CM, Var SR, Oliveira MF, Lada SM, Vargas MV, Massanella M, Little SJ, Richman DD, Strain MC, Pérez-Santiago J, Smith DM. Replication of Human Herpesviruses Is Associated with Higher HIV DNA Levels during Antiretroviral Therapy Started at Early Phases of HIV Infection. J Virol. 2016 Mar 28; 90(8):3944-52. doi: 10.1128/JVI.02638-15. PMID: 26842469; PMC4810527.
Ann HW, Jun S, Shin NY, Han S, Ahn JY, Ahn MY, Jeon YD, Jung IY, Kim MH, Jeong WY, Ku NS, Kim JM, Smith DM, Choi JY. Characteristics of Resting-State Functional Connectivity in HIV- Associated Neurocognitive Disorder. PLoS One. 2016 Apr 22; 11(4):e0153493. doi: 10.1371/journal.pone.0153493. eCollection 2016. PubMed PMID: 27104345; PubMed Central PMCID: PMC4841538.
Mehta SR, Murrell B, Anderson CM, Kosakovsky Pond SL, Wertheim JO, Young JA, Freitas L, Richman DD, Mathews WC, Scheffler K, Little SJ, Smith DM. Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California. Clin Infect Dis. 2016 Jul 1; 63(1):101-107. doi: 10.1093/cid/ciw161. PMID: 27174704; PMC4901863.
Wagner GA, Chaillon A, Liu S, Franklin DR Jr, Caballero G, Kosakovsky Pond SL, Vaida F, Heaton RK, Letendre SL, Grant I, Richman DD, Smith DM. HIV-associated neurocognitive disorder is associated with HIV-1 dual infection. AIDS. 2016 Nov 13; 30(17):2591-2597. DOI: 10.1097/QAD.0000000000001237. PMID: 27536983; PMC5083206.
Günthard HF, Saag MS, Benson CA, del Rio C, Eron JJ, Gallant JE, Hoy JF, Mugavero MJ, Sax PE, Thompson MA, Gandhi RT, Landovitz RJ, Smith DM, Jacobsen DM, Volberding PA. Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA. 2016 Jul 12; 316(2):191-210. doi: 10.1001/jama.2016.8900. PMID: 27404187; PMC5012643.
Karris MY, Umlauf A, Vaida F, Richman D, Little S, Smith D. A randomized controlled clinical trial on the impact of CCR5 blockade with maraviroc in early infection on T-cell dynamics. Medicine (Baltimore). 2016 Nov; 95(44):e5315. DOI: 10.1097/MD.0000000000005315. PMID: 27858912; PMC5591160.
de Almeida SM, Rotta I, Ribeiro CE, Smith D, Wang R, Judicello J, Potter M, Vaida F, Letendre S, Ellis RJ; HNRC Group. Blood-CSF barrier and compartmentalization of CNS cellular immune response in HIV infection. J Neuroimmunol. 2016 Dec 15; 301:41-48. doi: 10.1016/j.jneuroim.2016.10.009. PMID: 27836178; PMC5148696.
Hoenigl M, Pérez-Santiago J, Nakazawa M, de Oliveira MF, Zhang Y, Finkelman MA, Letendre S, Smith D, Gianella S. (1→3)-β-d-Glucan: A Biomarker for Microbial Translocation in Individuals with Acute or Early HIV Infection? Front Immunol. 2016 Oct 3; 7:404. DOI: 10.3389/fimmu.2016.00404. PMID: 27752257; PMC5046804.
Smith DM, Nakazawa M, Freeman ML, Anderson CM, Oliveira MF, Little SJ, Gianella S. Asymptomatic CMV Replication During Early Human Immunodeficiency Virus (HIV) Infection Is Associated With Lower CD4/CD8 Ratio During HIV Treatment. Clin Infect Dis. 2016 Dec 1; 63(11):1517-1524. Epub 2016 Sep 6. DOI: 10.1093/cid/ciw612. PMID: 27601222; PMC5106612.
Bharti AR, McCutchan A, Deutsch R, Smith DM, Ellis RJ, Cherner M, Woods SP, Heaton RK, Grant I, Letendre SL. Latent Toxoplasma Infection and Higher Toxoplasma gondii Immunoglobulin G Levels Are Associated With Worse Neurocognitive Functioning in HIV-Infected Adults. Clin Infect Dis. 2016 Dec 15; 63(12):1655-1660. Epub 2016 Oct 28. DOI: 10.1093/cid/ciw655. PMID: 27794019; PMC5146725.
Geiger R, Smith DM, Little SJ, Mehta SR. Validation of the GeneXpert® CT/NG Assay for use with Male Pharyngeal and Rectal Swabs. Austin J HIV AIDS Res. 2016; 3(1). pii: 1021. PMID: 27536736; PMC4985020.
Hoenigl M, Chaillon A, Mehta SR, Smith DM, Graff-Zivin J, Little SJ. Screening for acute HIV infection in community-based settings: Cost-effectiveness and impact on transmissions. J Infect. 2016 Nov; 73(5):476-484. doi: 10.1016/j.jinf.2016.07.019. PMID: 27521468; PMC5143169.
Gianella S, Kosakovsky Pond SL, Oliveira MF, Scheffler K, Strain MC, De la Torre A, Letendre S, Smith DM, Ellis RJ. Compartmentalized HIV rebound in the central nervous system after interruption of antiretroviral therapy. Virus Evol. 2016 Aug 3; 2(2):vew020. eCollection 2016 Jul. DOI: 10.1093/ve/vew020. PMID: 27774305; PMC5072458.
Laird Smith M, Murrell B, Eren K, Ignacio C, Landais E, Weaver S, Phung P, Ludka C, Hepler L, Caballero G, Pollner T, Guo Y, Richman D, Poignard P, Paxinos EE, Kosakovsky Pond SL, Smith DM. Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples. Virus Evol. 2016;2(2):vew018. Epub 2016/07/08. doi: 10.1093/ve/vew018. PubMed PMID: 29492273; PubMed Central PMCID: PMC5822884.
de Almeida SM, Rotta I, Jiang Y, Li X, Raboni SM, Ribeiro CE, Smith D, Potter M, Vaida F, Letendre S, Ellis RJ; HNRC Group. Biomarkers of chemotaxis and inflammation in cerebrospinal fluid and serum in individuals with HIV-1 subtype C versus B. J Neurovirol. 2016 Dec; 22(6):715- 724. DOI: 10.1007/s13365-016-0437-4. PMID: 27400932; PMC5130607.
Yek C, Gianella S, Plana M, Castro P, Scheffler K, García F, Massanella M, Smith DM. Standard vaccines increase HIV-1 transcription during antiretroviral therapy. AIDS. 2016 Sep 24; 30(15):2289-98. doi: 10.1097/QAD.0000000000001201. PMID: 27427877; PMCID: PMC5559226.
Chaillon A, Hoenigl M, Mehta SR, Weibel N, Little SJ, Smith DM. A practical online tool to estimate antiretroviral coverage for HIV infected and susceptible populations needed to reduce local HIV epidemics. Sci Rep. 2016 Jun 24; 6:28707. doi: 10.1038/srep28707. PMID: 27337983; PMC4919622.
Chaillon A, Gianella S, Little SJ, Caballero G, Barin F, Kosakovsky Pond S, Richman DD, Smith DM, Mehta SR. Characterizing the multiplicity of HIV founder variants during sexual transmission among MSM. Virus Evol. 2016;2(1):vew012. Epub 2016/06/08. doi: 10.1093/ve/vew012. PubMed PMID: 30186625; PubMed Central PMCID: PMC6118227.
Dan JM, Massanella M, Smith DM, Spina CA, Schrier R, Daar ES, Dube MP, Morris SR, Gianella S. Brief Report: Effect of CMV and HIV Transcription on CD57 and PD-1 T-Cell Expression During Suppressive ART. J Acquir Immune Defic Syndr. 2016 Jun 1; 72(2):133-7. doi: 10.1097/QAI.0000000000000936. PMID: 26818740; PMC4868660.
Chin BS, Chaillon A, Mehta SR, Wertheim JO, Kim G, Shin HS, Smith DM. Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals. J Med Virol. 2016 Oct; 88(10):1832-5. doi: 10.1002/jmv.24523. PMID: 26990771; PMC4969179.
Turner SS, Gianella S, Yip MJ, van Seggelen WO, Gillies RD, Foster AL, Barbati ZR, Smith DM, Fierer DS. Shedding of Hepatitis C Virus in Semen of Human Immunodeficiency Virus-Infected Men. Open Forum Infect Dis. 2016 Mar 11; 3(2):ofw057. doi: 10.1093/ofid/ofw057. PMID: 27186582; PMC4866572.
Hoenigl M, Green N, Camacho M, Gianella S, Mehta SR, Smith DM, Little SJ. Signs or Symptoms of Acute HIV Infection in a Cohort Undergoing Community-Based Screening. Emerg Infect Dis. 2016 Mar; 22(3):532-4. doi: 10.3201/eid2203.151607. PMID: 26890854; PMC4766914.
Panichsillapakit T, Patel D, Santangelo J, Richman DD, Little SJ, Smith DM. Colorectal Disorders in Acute Human Immunodeficiency Virus Infection: A Case Series. Open Forum Infect Dis. 2016 Jan 29; 3(1):ofw014. doi: 10.1093/ofid/ofw014. PMID: 26925432; PMC4766383.
Kamat R, Doyle KL, Iudicello JE, Morgan EE, Morris S, Smith DM, Little SJ, Grant I, Woods SP, Translational Methamphetamine ARCG. Neurobehavioral Disturbances During Acute and Early HIV Infection. Cognitive and behavioral neurology : official journal of the Society for Behavioral and Cognitive Neurology. 2016;29(1):1-10. Epub 2016/03/24. doi: 10.1097/WNN.0000000000000084. PubMed PMID: 27008244; PubMed Central PMCID: PMC4806542.
Glinka ER, Smith DM, Johns ST. Timing Matters – Influenza Vaccination to HIV-Infected Patients. HIV Med. 2016 Sep; 17(8):601-4. doi: 10.1111/hiv.12360. Epub 2016 Jan 26. PMID: 26810556; PMC4960000.
Var SR, Day TR, Vitomirov A, Smith DM, Soontornniyomkij V, Moore DJ, Achim CL, Mehta SR, Pérez-Santiago J. Mitochondrial injury and cognitive function in HIV infection and methamphetamine use. AIDS. 2016 Mar 27; 30(6):839-48. doi: 10.1097/QAD.0000000000001027. PMID: 26807965; PMC4785088.
Shi Y, Wang J, Wang Y, Wang A, Guo H, Wei F, Mehta SR, Espitia S, Smith DM, Liu L, Zhang Y, Chen D. A novel mutant 10Ala/Arg together with mutant 144Ser/Arg of hepatitis B virus X protein involved in hepatitis B virus-related hepatocarcinogenesis in HepG2 cell lines. Cancer Lett. 2016 Feb 28; 371(2):285-91. doi: 10.1016/j.canlet.2015.12.008. PMID: 26706415; PMC4934374.
Vanpouille C, Introini A, Morris SR, Margolis L, Daar ES, Dube MP, Little SJ, Smith DM, Lisco A, Gianella S. Distinct cytokine/chemokine network in semen and blood characterize different stages of HIV infection. AIDS. 2016 Jan; 30(2):193-201. doi: 10.1097/QAD.0000000000000964. PMID: 26558730; PMC4862605.
Hoenigl M, Chaillon A, Moore DJ, Morris SR, Smith DM, Little SJ. Clear Links Between Starting Methamphetamine and Increasing Sexual Risk Behavior: A Cohort Study Among Men Who Have Sex With Men. J Acquir Immune Defic Syndr. 2016 Apr 15; 71(5):551-7. doi: 10.1097/QAI.0000000000000888. PMID: 26536321; PMC4788567.
Choi JY, Chaillon A, Oh JO, Ahn JY, Ann HW, Jung IY, Ahn MY, Jeon YD, Ku NS, Smith DM, Kim JM. HIV migration between blood plasma and cellular subsets before and after HIV therapy. J Med Virol. 2016 Apr; 88(4):606-13. doi: 10.1002/jmv.24375. PMID: 26348372; PMC4731240.
Day TR, Smith DM, Heaton RK, Franklin D, Tilghman MW, Letendre S, Jin H, Wu Z, Shi C, Yu X, Pérez-Santiago J. Subtype associations with HIV-associated neurocognitive disorder in China. J Neurovirol. 2016 Apr; 22(2):246-50. doi: 10.1007/s13365-015-0377-4. PMID: 26306690; PMC4769127.
Panichsillapakit T, Smith DM, Wertheim JO, Richman DD, Little SJ, Mehta SR. Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996- 2013. J Acquir Immune Defic Syndr. 2016 Feb 1; 71(2):228-36. doi: 10.1097/QAI.0000000000000831. PMID: 26413846; PMC4712087.
Dillon SM, Lee EJ, Kotter CV, Austin GL, Gianella S, Siewe B, Smith DM, Landay AL, McManus MC, Robertson CE, Frank DN, McCarter MD, Wilson CC. Gut dendritic cell activation links an altered colonic microbiome to mucosal and systemic T-cell activation in untreated HIV-1 infection. Mucosal Immunol. 2016 Jan; 9(1):24-37. doi: 10.1038/mi.2015.33. PMID: 25921339; PMC4626441.